CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES09373
EES16732

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22530.1	EES09373	AT1G35670.1	19130088
AT3G22530.1	EES16732	AT1G35670.1	19130088
AT3G22530.1	EES09373	AT4G09570.1	19130088
AT3G22530.1	EES16732	AT4G09570.1	19130088
AT4G14830.1	EES09373	AT1G35670.1	19130088
AT4G14830.1	EES16732	AT1G35670.1	19130088
AT4G14830.1	EES09373	AT4G09570.1	19130088
AT4G14830.1	EES16732	AT4G09570.1	19130088

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95920	Sorghum	mitochondrion	78.98	70.06
Zm00001d007836_P001	Maize	mitochondrion	68.79	63.53
Zm00001d018908_P001	Maize	mitochondrion	67.52	62.72
Os07t0173100-00	Rice	mitochondrion	63.69	58.48
TraesCS2D01G246400.1	Wheat	mitochondrion	58.6	54.12
TraesCS2B01G259800.1	Wheat	mitochondrion	56.69	52.35
GSMUA_Achr9P25740_001	Banana	mitochondrion	45.22	44.1
GSMUA_Achr9P10550_001	Banana	mitochondrion	47.77	42.86
KRH77848	Soybean	mitochondrion	37.58	42.75
PGSC0003DMT400051869	Potato	plastid	38.22	40.82
PGSC0003DMT400049751	Potato	mitochondrion	41.4	40.12
Solyc09g065370.1.1	Tomato	mitochondrion	41.4	40.12
Solyc06g084220.1.1	Tomato	plastid	36.31	39.31
KRH71407	Soybean	mitochondrion	34.39	38.85
AT4G14830.1	Thale cress	cytosol	36.94	38.16
PGSC0003DMT400034952	Potato	cytosol	35.67	37.84
CDY34247	Canola	cytosol	38.22	37.04
Bra023821.1-P	Field mustard	cytosol	38.22	37.04
VIT_07s0151g00830.t01	Wine grape	cytosol	38.85	36.75
EER92826	Sorghum	cytosol	39.49	36.69
CDX98212	Canola	mitochondrion	37.58	36.2
PGSC0003DMT400075166	Potato	cytosol	31.21	36.03
Solyc09g061350.1.1	Tomato	cytosol	24.84	35.78
PGSC0003DMT400042036	Potato	cytosol	37.58	35.12
Solyc09g082150.1.1	Tomato	cytosol	24.2	34.86
KRH32032	Soybean	mitochondrion	28.03	34.38
KRH35512	Soybean	endoplasmic reticulum, extracellular	41.4	33.51
KRG91317	Soybean	endoplasmic reticulum, extracellular	40.76	32.99
PGSC0003DMT400082124	Potato	cytosol, mitochondrion	37.58	31.38
AT3G22530.1	Thale cress	endoplasmic reticulum, extracellular	39.49	31.31
Solyc09g061510.1.1	Tomato	cytosol	17.83	30.11
Bra039959.1-P	Field mustard	extracellular	36.31	29.69
Solyc06g054150.1.1	Tomato	extracellular, golgi, mitochondrion, plastid	38.22	29.27
CDY10290	Canola	endoplasmic reticulum, extracellular, plasma membrane	36.31	29.08
VIT_05s0020g03610.t01	Wine grape	cytosol	44.59	29.05
CDY10651	Canola	endoplasmic reticulum, extracellular, plasma membrane	35.67	28.57
KRH55262	Soybean	cytosol, plasma membrane, plastid	26.75	24.28

Protein Annotations

EnsemblPlants:OQU90686	EnsemblPlantsGene:SORBI_3001G027000	PANTHER:PTHR33879	PANTHER:PTHR33879:SF3	ProteinID:OQU90686	ProteinID:OQU90686.1
SEG:seg	UniParc:UPI000B42428E	UniProt:A0A1Z5S4J8	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr1:-:2111441..2113889

Molecular Weight (calculated)

16522.6 Da

IEP (calculated)

6.106

GRAVY (calculated)

-0.056

Length

157 amino acids

Sequence
(BLAST)

001: MSPADQTYKR KKRSAGRLRR LSHIFAMVLE LPFAAEVDVS VEEDAAALRF VVDVNGFSSP AGGPRAHAVE IHPGVTKVVL RGLSFGAHDD DDGAGAAFEL
101: DRWRFRLPPC TRPAVATATY AQGELVVTVP KGAGPDDGDG DATAAALGGT DRVLVLV

Best Arabidopsis Sequence Match ( AT3G22530.1 )
(BLAST)

001: MILIPVKIQS LFSYLLLLNL IQSIDKPNPE AMRVHPIPRN INNTLIHHHH HNPTREPGKN LRRLPHIFNR VLELPLRSEA DVAVEERHDC FRFVAETVGL
101: CNGDGEMRAY MVEIHPGITK IVVRTNGSSS LGLSLDELEL DVWRFRLPES TRPELVTVAC VDGDLIVTVP KNAEEEDDDG GGGDFGQGIG SGRLVLVQ

Arabidopsis Description

Heat shock protein [Source:UniProtKB/TrEMBL;Acc:Q8VY73]
SUBAcon: [endoplasmic reticulum,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.