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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, plasma membrane, cytosol

Predictor Summary:
  • cytosol 2
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, peroxisome, plasma membrane
BaCelLo:cytosol
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G05040.1 Thale cress cytosol 45.75 51.75
Bra000823.1-P Field mustard plasma membrane 35.24 51.35
CDY21969 Canola nucleus 26.58 51.34
Bra034210.1-P Field mustard cytosol, nucleus, plasma membrane 55.49 50.92
CDY48209 Canola cytosol, peroxisome, plasma membrane 49.0 44.9
AT4G03470.1 Thale cress cytosol, nucleus, plasma membrane, plastid 46.68 44.22
CDY48563 Canola cytosol, nucleus, plasma membrane, plastid 48.38 44.21
AT4G14390.1 Thale cress plasma membrane 47.3 44.09
AT4G14400.1 Thale cress cytosol, nucleus, peroxisome 45.29 43.73
CDY45915 Canola extracellular, plasma membrane, plastid, vacuole 8.5 35.48
CDY35767 Canola cytosol, peroxisome, plasma membrane 33.54 35.46
CDY48208 Canola cytosol 33.85 35.15
CDY45914 Canola cytosol 23.49 34.62
VIT_12s0059g00160.t01 Wine grape cytosol, peroxisome, plasma membrane 29.06 32.3
VIT_12s0059g00150.t01 Wine grape cytosol 19.17 32.04
VIT_12s0059g00110.t01 Wine grape cytosol 19.17 32.04
VIT_12s0059g00130.t01 Wine grape cytosol 18.86 32.02
VIT_12s0059g00090.t01 Wine grape cytosol 17.16 30.92
CDY18182 Canola cytosol, peroxisome, plasma membrane 25.81 29.61
VIT_12s0059g00060.t01 Wine grape cytosol 23.34 29.38
CDY58683 Canola cytosol 13.45 28.52
VIT_12s0028g04020.t01 Wine grape plasma membrane 13.91 28.3
VIT_12s0059g00050.t01 Wine grape plasma membrane 27.98 27.98
VIT_12s0028g03920.t01 Wine grape cytosol, peroxisome, plasma membrane 28.59 27.78
VIT_12s0028g03990.t01 Wine grape cytosol 25.04 27.32
VIT_12s0028g04030.t01 Wine grape cytosol, peroxisome, plasma membrane, plastid 28.44 27.18
VIT_12s0028g03960.t01 Wine grape plasma membrane 17.31 26.92
VIT_12s0028g03950.t01 Wine grape cytosol, extracellular, plasma membrane 26.74 25.94
KRH25567 Soybean plasma membrane 25.04 25.31
KRH25558 Soybean cytosol, peroxisome, plasma membrane, plastid 25.04 25.08
CDY16445 Canola cytosol, plasma membrane, plastid 21.79 24.96
VIT_12s0028g04010.t01 Wine grape cytosol 16.69 24.11
KRH25555 Soybean cytosol, peroxisome, plasma membrane 24.27 23.9
KRH55987 Soybean cytosol, peroxisome, plasma membrane 24.42 23.69
CDY21967 Canola plasma membrane 27.51 23.58
KRH55981 Soybean cytosol 21.02 22.74
CDY55069 Canola cytosol, peroxisome, plasma membrane 8.35 22.5
KRH55978 Soybean cytosol, peroxisome, plasma membrane 22.1 21.8
VIT_12s0028g04000.t01 Wine grape cytosol, plasma membrane 27.67 21.75
KRH55984 Soybean cytosol 22.1 21.54
KRH55986 Soybean cytosol 8.5 21.4
CDY40662 Canola plasma membrane 18.86 21.14
CDY40658 Canola cytosol, peroxisome, plasma membrane 18.7 20.97
KRH55979 Soybean mitochondrion, nucleus 7.11 20.91
CDX93618 Canola cytosol 9.27 20.83
CDY30009 Canola cytosol, plasma membrane, plastid 18.86 20.68
CDX74181 Canola cytosol, peroxisome, plasma membrane 18.39 20.59
VIT_12s0059g00080.t01 Wine grape cytosol, nucleus, plasma membrane 27.51 20.09
CDX95126 Canola cytosol 16.38 19.63
CDY10435 Canola cytosol 15.92 19.54
CDY15549 Canola cytosol 16.85 19.53
CDY70132 Canola cytosol 15.77 19.35
CDY58363 Canola cytosol 16.54 19.24
CDX71059 Canola plastid 15.92 18.86
CDX88738 Canola plastid 15.46 18.66
CDY50335 Canola cytosol 16.54 18.17
CDY42145 Canola cytosol 16.38 18.12
CDY50551 Canola cytosol 16.38 18.0
VIT_12s0059g00120.t01 Wine grape cytosol 22.87 17.94
CDY36249 Canola cytosol 14.68 17.76
CDY17652 Canola cytosol 14.53 17.64
CDY69308 Canola plasma membrane 15.77 17.2
CDY07932 Canola nucleus, plastid 15.92 17.2
CDX86566 Canola cytosol 15.15 16.98
CDY19113 Canola cytosol 16.54 16.96
CDX73985 Canola nucleus 15.92 16.91
CDY59983 Canola cytosol 7.88 16.89
CDY42071 Canola cytosol, nucleus, plasma membrane, plastid 16.23 16.88
CDY34515 Canola cytosol, nucleus, plasma membrane, plastid 15.92 16.43
CDY39673 Canola plasma membrane 15.15 16.33
CDY20635 Canola plasma membrane 14.68 16.3
CDX73200 Canola cytosol 7.57 16.23
CDY08436 Canola cytosol 16.38 16.06
CDX99605 Canola cytosol 6.96 15.79
CDY20943 Canola cytosol 13.76 15.48
CDY20639 Canola cytosol, peroxisome, plasma membrane 10.05 14.19
CDY58682 Canola cytosol 1.39 10.71
CDY16446 Canola cytosol 0.15 7.14
CDY20642 Canola nucleus 10.2 4.63
Protein Annotations
Gene3D:1.25.40.20Gene3D:1.25.40.960MapMan:35.1GO:A0A078HWQ6UniProt:A0A078HWQ6InterPro:ACD6
InterPro:Ankyrin_rptInterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfEnsemblPlants:CDY42176ProteinID:CDY42176ProteinID:CDY42176.1
GO:GO:0003674GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0006950GO:GO:0007154
GO:GO:0007165GO:GO:0008150GO:GO:0009719GO:GO:0009987GO:GO:0016020GO:GO:0016021
GO:GO:0031347GO:GO:0071446GO:GO:2000031EnsemblPlantsGene:GSBRNA2T00074369001InterPro:IPR002110InterPro:IPR020683
InterPro:IPR036770PFAM:PF12796PFAM:PF13962InterPro:PGG_domPFscan:PS50088PFscan:PS50297
PANTHER:PTHR24177PANTHER:PTHR24177:SF109SMART:SM00248SUPFAM:SSF48403TMHMM:TMhelixUniParc:UPI0004EDBB6C
SEG:seg:::::
Description
BnaC03g64970DBnaC03g64970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HWQ6]
Coordinates
chrLK032517:+:3490..5918
Molecular Weight (calculated)
72083.5 Da
IEP (calculated)
7.256
GRAVY (calculated)
0.239
Length
647 amino acids
Sequence
(BLAST)
001: MGSSEEAVLD RVEAQSYFSM NLIKRGLRSL GLLQTGEAET EPVPDYLTNL EISDVFNLPG ESMQIDPEIF TAVCAGNKNS LEELKRSGKP MACLKSDQVG
101: SVLHLAAACN HLELVKIIAS ECPCLLLKLD SRNQLPLHVA AHAGHSTVVE ALVATVGYIS AGLSDEDGRE RLNLYVVKNK DGDTPLHLAL KGRHMSSANY
201: LVSANQQASF LANKDGISPL YLAVETEDLP LVKAIYILDI DSHLEGRKYL LHAALRAKSL DTLKFLLKEY PSLVNMQDEE GRTCLWLAAS MGYYEGVSIL
301: LDRWTKGVYV CNGDGSFPIH IAVEKRHMRV VFLLLKRYPD SKHLLNKQGQ NIVHIATKSG IGALFLFSYL WLTGWINTLV ETQDKDGNSP LHEATIHWRP
401: RTLFVLLLMT KIKWLYVQNN DGLTALDIAE KNMKRNYIFM ERVTLMVLLY FYAPISRKSW WIKVTKPSEP LEGEKTNNYV GTLLVVAALV ATVTFTAGFT
501: IPGGFNGSGE KLGMAALENK PKLAYFMIFN IMAMQSSIVT IAILIWGQLG DQSLVPMAFT WALRSLFFAL LCMVLAFYWG VMVTFVHVKG VVIFLNVTYA
601: IFLFLMLFNL GPHVFLQTPG IPAFLGSCFL MFVMLVNEDS FPTPVKT
Best Arabidopsis Sequence Match ( AT4G05040.3 )
(BLAST)
001: MDSSEAHLDR IEAQRSTDVS HDQQKKRYFP MNLINKVASK LCSRGGDGAT PPMGDNESGL EFLNNLKLSD LFHLPGENVQ MNTEVFSGLS DGDKECLEML
101: KGVGTPMACL KSDRGDSVLH LAARWGHLEL VKNIISECPC LVLELNFKDQ LPLHVAAHAG HSAIVEALVA SVTFFSDRLA EEDRERLNPY VLRDKYGNTA
201: LHLAIEGRYM EMAASLVNEN QNASFLENNE GISSLYMAVE AGDVTLVKEI LKTAGNNDLE GRNSNLDSKL EGRKHLVHVA LNARSIGVLD VILNEYPSLE
301: DERDEEGRTC LSFAASIGFY KGVCNLLDRS TKNVYVCDED GSFPIHTAAE NGHIRIVKEI LKRCPHSKHM LNKLGQNVLH IAAKIGEHNL VKSLMRSDDT
401: KHLGVGQDVD GNTPLHLAVL NWRYRSIRTL ASDVKILQLR NDNGLTARGI AESVLKPNYI FHERLTLAFL LDAHAFRGCG SVKSLTKPSE PLDHEKSRDY
501: VNTLLLVAAL VATMTFAAGF TIPGGFNSSA PHLGRATLTT DPNLFFFLLF DILAMQTSVA SICTLIYMGA VG
Arabidopsis Description
AT4G05040 protein [Source:UniProtKB/TrEMBL;Acc:Q94A85]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.