CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20639	Canola	cytosol, peroxisome, plasma membrane	21.58	67.25
Bra018445.1-P	Field mustard	cytosol	27.33	65.44
CDY20635	Canola	plasma membrane	24.67	60.38
CDY20943	Canola	cytosol	24.18	60.0
AT1G10340.1	Thale cress	cytosol	23.76	58.65
CDY69308	Canola	plasma membrane	21.58	51.94
CDY39673	Canola	plasma membrane	21.44	51.0
VIT_09s0002g03920.t01	Wine grape	cytosol	11.84	29.55
KRH09919	Soybean	cytosol, peroxisome, plasma membrane	12.19	26.89
CDY55069	Canola	cytosol, peroxisome, plasma membrane	4.34	25.83
CDX93618	Canola	cytosol	5.05	25.0
VIT_09s0002g03910.t01	Wine grape	plasma membrane	12.54	24.83
CDY59983	Canola	cytosol	4.27	20.2
CDX99605	Canola	cytosol	3.99	20.0
CDX73200	Canola	cytosol	4.13	19.54
CDY45915	Canola	extracellular, plasma membrane, plastid, vacuole	2.1	19.35
CDX95126	Canola	cytosol	6.73	17.78
CDY58363	Canola	cytosol	6.59	16.91
CDX88738	Canola	plastid	6.24	16.6
CDY10435	Canola	cytosol	6.1	16.51
CDY15549	Canola	cytosol	6.45	16.49
CDX71059	Canola	plastid	6.31	16.48
CDY70132	Canola	cytosol	6.03	16.32
CDY17652	Canola	cytosol	5.96	15.95
CDY36249	Canola	cytosol	5.96	15.89
CDY19113	Canola	cytosol	6.73	15.21
CDY07932	Canola	nucleus, plastid	6.38	15.19
CDY42071	Canola	cytosol, nucleus, plasma membrane, plastid	6.59	15.11
CDX73985	Canola	nucleus	6.38	14.94
CDY50335	Canola	cytosol	6.17	14.94
CDY50551	Canola	cytosol	6.1	14.77
CDY34515	Canola	cytosol, nucleus, plasma membrane, plastid	6.45	14.67
CDY42145	Canola	cytosol	5.96	14.53
CDX86566	Canola	cytosol	5.68	14.04
CDY30009	Canola	cytosol, plasma membrane, plastid	5.4	13.05
CDY35767	Canola	cytosol, peroxisome, plasma membrane	5.47	12.75
CDY08436	Canola	cytosol	5.89	12.73
CDX74181	Canola	cytosol, peroxisome, plasma membrane	5.12	12.63
CDY40658	Canola	cytosol, peroxisome, plasma membrane	5.05	12.48
CDY40662	Canola	plasma membrane	5.05	12.48
CDY58683	Canola	cytosol	2.66	12.46
CDY18182	Canola	cytosol, peroxisome, plasma membrane	4.77	12.06
CDY48208	Canola	cytosol	5.26	12.04
CDY16445	Canola	cytosol, plasma membrane, plastid	4.7	11.86
CDY42176	Canola	cytosol, peroxisome, plasma membrane	4.63	10.2
CDY45914	Canola	cytosol	3.01	9.79
CDY21967	Canola	plasma membrane	4.84	9.14
CDY48209	Canola	cytosol, peroxisome, plasma membrane	4.34	8.78
CDY48563	Canola	cytosol, nucleus, plasma membrane, plastid	4.13	8.33
CDY21969	Canola	nucleus	0.91	3.88
CDY58682	Canola	cytosol	0.0	0.0
CDY16446	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:1.25.40.20	MapMan:16.4.4.3	Gene3D:3.30.70.330	Gene3D:3.40.50.720	GO:A0A078G6P9	UniProt:A0A078G6P9
InterPro:Ankyrin_rpt	InterPro:Ankyrin_rpt-contain_dom	InterPro:Ankyrin_rpt-contain_sf	EnsemblPlants:CDY20642	ProteinID:CDY20642	ProteinID:CDY20642.1
ncoils:Coil	GO:GO:0000398	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016491	GO:GO:0046872	GO:GO:0055114	GO:GO:0089701	EnsemblPlantsGene:GSBRNA2T00012823001	InterPro:IPR000504
InterPro:IPR000571	InterPro:IPR002110	InterPro:IPR012677	InterPro:IPR020683	InterPro:IPR036770	InterPro:NAD(P)-bd_dom_sf
InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00106	PFAM:PF00642	PFAM:PF12796	PFAM:PF13962	InterPro:PGG_dom
PRINTS:PR01848	ScanProsite:PS00061	PFscan:PS50102	PFscan:PS50103	PFscan:PS50297	PANTHER:PTHR24177
PANTHER:PTHR24177:SF18	InterPro:RBD_domain_sf	InterPro:RRM_dom	InterPro:RRM_dom_euk	InterPro:SDR_fam	SMART:SM00248
SMART:SM00356	SMART:SM00361	SUPFAM:SSF48403	SUPFAM:SSF51735	SUPFAM:SSF54928	InterPro:Sc_DH/Rdtase_CS
TMHMM:TMhelix	InterPro:U2AF_small	UniParc:UPI0004EE1C9E	InterPro:Znf_CCCH	SEG:seg	:

Description

BnaC08g14160DBnaC08g14160D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G6P9]

Coordinates

chrLK032110:+:412173..421289

Molecular Weight (calculated)

161024.0 Da

IEP (calculated)

7.766

GRAVY (calculated)

-0.728

Length

1427 amino acids

Sequence
(BLAST)

0001: MELRIKALNV ESNSKNLIAS ITNNSSVPEL YGIVADILSI SYFFYYIILE RFPDLAREEA WPVQGGSLSS LLHHACDRGD LELTRILLGL DQRLEEALNT
0101: NGLSPLHLAV LRGSVVILEE FINKAPLSFL SHTPSKETVF HLAARNKNMD AFVFMAERLG SNSQFLLQKT DENGNTVLHT AASVACGAPL IRYIIAMKIV
0201: DISNKNKMGF AAYHLLPHDA QDFELLSSWL RFDTETSDEL DSDLLNLIGL NTSEMVERKT RKAHGVKKGS ENLEYDMYIE ALQNARNTIT IVAVLIASVA
0301: YAGGINPPGG VYQDGPWRGK SIVGKTTAFK VFAICNNIAL FTSLAIVILL VSIIPYKRKP LKKLLVATHR MMWVSIGFMA TAYVAASWVT IPHYHGTRWL
0401: FPAIVAVAGG ALAVLFSYLG VEAIGHWFKK KARVGSVPSS SSTSEREVNA IGIMEPRNEK EEGERLEEAM GGFEESKEKS AEMSRKEKRK AMKKMKRKQV
0501: RKEIASKERE EAEAKLNDPA EQEKLKAIEE EEERKREKEL REFEDSERAW REAMEIQRKK EEVEEKRWKE LEELRKLEAS GDDECGEDDD GEYEYIEEGP
0601: PEIIFQGNEI ILRKNKVKVP KRSVAQVEGN EIADRPTSNP LPPGTEAFPK NHNVSSAQQI LDSVAQEVPN FGTEQDKAHC PFHLKTGACR FGPRCSRVHF
0701: YPDKSCTILM KNMYNGPGIA WEQDEGLEYT DEEAEQCYEE FYEDVHTEFL KYGELINFKV CRNGSFHLKG NVYVHYRSLE SAMLAYQSIN GRYFAGKQVN
0801: CEFVNISRWK VAICGEFMKS RLKTCSRGSA CNFIHCFRNP GGDYEWADFD KPPPRFWIRK MAALFGYSDE DLKHMEREYS GSLSEFRSDQ PSDSQRQASR
0901: RSRSRDHDHV NVGSKPSYRS RKNHGDTRDS SRGHKLSRHE ENCHGSPSSN RDGSLEREIY KEPRHAKETS RHESKWSEHS PTHRGMRKRI HERYSDDDSG
1001: DDDGRGETDH KRKSSRRYGR RGSNSEVQER LDDEEDTRCH WSSSDRRSRK EDHREGSLGD QEESHAVGEK SKRERSSSRH SHEGDSSGSR HRRHKRSDLR
1101: DKDGNERKRS VETSPRDKDR DKSKQRRRYK TGDPDYDRSR NGKRENVSGS SSDEKREERH KEGSGSSHRK RRRSSHEQTP KEPEEIIEPT PFSGAANSVT
1201: SAKTVLITGV SKGLGRALSL EMAKRGHTVI GCARTQEKFT ALQSELSSPE NHLLLTADVK SDSSVKEMAH TIMEKKGVPD IIVNNAGTIN KNSKIWEVSA
1301: EDFDSVMDTN VKGVVNVLRH FIPLMLPRKQ GIIVNMSSGW GRSGAALVAP YCASKWAIEG LSRSVAKEVA EGMAVVALNP GVINTEMLTS CFGNTASLYQ
1401: APDAWAVKAA TMILNLTAGD NGGSLTV

Best Arabidopsis Sequence Match ( AT1G10320.2 )
(BLAST)

001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV

Arabidopsis Description

Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.