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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, cytosol, plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, peroxisome, plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT4G03480.1 Thale cress mitochondrion 63.17 67.68
CDY48563 Canola cytosol, nucleus, plasma membrane, plastid 65.44 65.25
CDY21969 Canola nucleus 30.03 63.28
CDY42176 Canola cytosol, peroxisome, plasma membrane 44.9 49.0
CDY35767 Canola cytosol, peroxisome, plasma membrane 36.12 41.67
CDY48208 Canola cytosol 36.12 40.93
CDY45915 Canola extracellular, plasma membrane, plastid, vacuole 8.92 40.65
CDY45914 Canola cytosol 24.22 38.95
VIT_12s0059g00130.t01 Wine grape cytosol 19.41 35.96
VIT_12s0059g00110.t01 Wine grape cytosol 18.84 34.37
CDY18182 Canola cytosol, peroxisome, plasma membrane 27.2 34.04
VIT_12s0059g00150.t01 Wine grape cytosol 18.56 33.85
VIT_12s0059g00160.t01 Wine grape cytosol, peroxisome, plasma membrane 27.9 33.85
VIT_12s0059g00090.t01 Wine grape cytosol 17.0 33.43
VIT_12s0028g04020.t01 Wine grape plasma membrane 15.01 33.33
VIT_12s0059g00060.t01 Wine grape cytosol 22.95 31.52
CDY58683 Canola cytosol 13.6 31.48
VIT_12s0028g03920.t01 Wine grape cytosol, peroxisome, plasma membrane 29.32 31.08
VIT_12s0028g03960.t01 Wine grape plasma membrane 17.85 30.29
KRH25555 Soybean cytosol, peroxisome, plasma membrane 27.62 29.68
KRH25567 Soybean plasma membrane 26.49 29.22
VIT_12s0059g00050.t01 Wine grape plasma membrane 26.77 29.21
VIT_12s0028g04030.t01 Wine grape cytosol, peroxisome, plasma membrane, plastid 27.34 28.51
VIT_12s0028g03990.t01 Wine grape cytosol 23.94 28.5
KRH55987 Soybean cytosol, peroxisome, plasma membrane 26.35 27.89
KRH25558 Soybean cytosol, peroxisome, plasma membrane, plastid 25.35 27.71
CDY21967 Canola plasma membrane 28.9 27.02
VIT_12s0028g03950.t01 Wine grape cytosol, extracellular, plasma membrane 25.5 26.99
KRH55981 Soybean cytosol 22.1 26.09
KRH55986 Soybean cytosol 9.21 25.29
CDY16445 Canola cytosol, plasma membrane, plastid 20.11 25.13
VIT_12s0028g04010.t01 Wine grape cytosol 15.86 25.0
KRH55978 Soybean cytosol, peroxisome, plasma membrane 22.52 24.24
KRH55984 Soybean cytosol 22.38 23.8
KRH55979 Soybean mitochondrion, nucleus 7.22 23.18
VIT_12s0028g04000.t01 Wine grape cytosol, plasma membrane 26.77 22.96
CDY40658 Canola cytosol, peroxisome, plasma membrane 18.56 22.7
CDY40662 Canola plasma membrane 18.41 22.53
CDY55069 Canola cytosol, peroxisome, plasma membrane 7.65 22.5
CDX74181 Canola cytosol, peroxisome, plasma membrane 18.27 22.32
CDY30009 Canola cytosol, plasma membrane, plastid 18.41 22.03
VIT_12s0059g00080.t01 Wine grape cytosol, nucleus, plasma membrane 26.2 20.88
CDX93618 Canola cytosol 8.22 20.14
CDX88738 Canola plastid 15.01 19.78
CDY10435 Canola cytosol 14.73 19.73
CDX95126 Canola cytosol 15.01 19.63
CDY58363 Canola cytosol 15.44 19.6
CDX71059 Canola plastid 15.16 19.6
CDY70132 Canola cytosol 14.59 19.54
VIT_12s0059g00120.t01 Wine grape cytosol 22.52 19.27
CDY15549 Canola cytosol 15.16 19.18
CDX86566 Canola cytosol 14.31 17.5
CDY19113 Canola cytosol 15.3 17.12
CDY42071 Canola cytosol, nucleus, plasma membrane, plastid 15.01 17.04
CDY42145 Canola cytosol 14.02 16.92
CDY50335 Canola cytosol 14.02 16.81
CDY50551 Canola cytosol 13.88 16.64
CDY59983 Canola cytosol 7.08 16.56
CDX73200 Canola cytosol 7.08 16.56
CDY07932 Canola nucleus, plastid 13.88 16.36
CDY17652 Canola cytosol 12.32 16.32
CDY36249 Canola cytosol 12.32 16.26
CDY34515 Canola cytosol, nucleus, plasma membrane, plastid 14.31 16.11
CDX73985 Canola nucleus 13.88 16.09
CDY69308 Canola plasma membrane 13.17 15.68
CDX99605 Canola cytosol 6.23 15.44
CDY20635 Canola plasma membrane 12.46 15.09
CDY08436 Canola cytosol 14.02 15.0
CDY39673 Canola plasma membrane 12.75 15.0
CDY20943 Canola cytosol 12.18 14.96
CDY20639 Canola cytosol, peroxisome, plasma membrane 8.64 13.32
CDY58682 Canola cytosol 1.56 13.1
CDY20642 Canola nucleus 8.78 4.34
CDY16446 Canola cytosol 0.0 0.0
Protein Annotations
Gene3D:1.25.40.20MapMan:35.1GO:A0A078IFT8UniProt:A0A078IFT8InterPro:ACD6InterPro:Ankyrin_rpt
InterPro:Ankyrin_rpt-contain_domInterPro:Ankyrin_rpt-contain_sfEnsemblPlants:CDY48209ProteinID:CDY48209ProteinID:CDY48209.1GO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0006950GO:GO:0007154GO:GO:0007165
GO:GO:0008150GO:GO:0009719GO:GO:0009987GO:GO:0016020GO:GO:0016021GO:GO:0031347
GO:GO:0071446GO:GO:2000031EnsemblPlantsGene:GSBRNA2T00089036001InterPro:IPR002110InterPro:IPR020683InterPro:IPR036770
PFAM:PF12796PFAM:PF13962InterPro:PGG_domPFscan:PS50088PFscan:PS50297PANTHER:PTHR24177
PANTHER:PTHR24177:SF109SMART:SM00248SUPFAM:SSF48403TMHMM:TMhelixUniParc:UPI0004EEE4D7SEG:seg
Description
BnaCnng16000DBnaCnng16000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IFT8]
Coordinates
chrLK032759:-:93424..96877
Molecular Weight (calculated)
77732.9 Da
IEP (calculated)
6.360
GRAVY (calculated)
0.112
Length
706 amino acids
Sequence
(BLAST)
001: MDCSEARTDK IEAQRLTGVS HDIESVPDFL TNLRLSDLYN LPGEYVEMHP EIFSAMRAGN IEYLERMKSY GTPMACLKSD LGDSVLHLAA AWGHLELVKS
101: LVSECPSLLL ESNGKGQLPL HVAARAGHSA VVEALILSIT FFADRFSEEG REKLNLFVLK DEYGDTPLHL AFKDLYEKTE YQQRSTKSSL SHLIMHCFRS
201: ISISDPSTHL METAACLVSA DQRASFLANK NGISPLYLAI EAGNVSLVNA MLNRSGNNVQ SKNLTSELEG RKSLVHAALM AKSTDVLDVI LSEDTDLLNE
301: RDEEGRTCLS VGASMGYYKG ICKVLDRSTN SVYERDEDGS FPIHMAVEKG HEKVVREILK RCPDSVVLIN KQGQNILHIA AKSGKAVSFL LGYIRRLYTK
401: YHLINEQDVD GNTPLHLATI NWRPRTVDSL TSFASTTTNI LNIQNKDGLR PLDLAELNLQ SDYYLRERLT LMVLLCVCAP RGVAWLPTSG MTLRSRSEHH
501: LDANKYKDHI NALLLVAALV ATVTFAAGFT IPGGFNSSAP DMGMAVLAYD STLFFFLVLD TLAMQSSVVA IVALIWALLG DPAIVHRAFH LALPSLFLAL
601: LSMSWAFVAA LQATIKQNSV LINVISITSM VFYGLIIFLL TPYVIPQVPG FPFLQRLTRI YLILLLIFVN EDDSGRHYTS GSDNMCVKSV AESVGSSGAD
701: QVGKSA
Best Arabidopsis Sequence Match ( AT4G03480.2 )
(BLAST)
001: MVRSHLLRAT PEASPLKPAS SPSNCRLSLS PVELRLYFIR DDDFKVKVDI FKTSYQNSLF ELPCCDKSGD HHTHSDLQTK ARLDTIQVHR STVVCLDTES
101: VPEFLTSLRF SDLFNLPGEY VPMNPEIFSA MRAGNIELLE KLKSYETPMA CLKSDGGDSV LHLAAASGHL ELVKNIITEC PCLLLEPNSK YQIPLHVAAR
201: AGRSAVVKAL VASVLYFSPR VPEEDRDRLN IYVLKDIDGD TPLHAALKDL HEKAELLRYQ ERIRKLSLSH LIMHWRRSRC ISFSDASTRQ METAACLVNA
301: DQHASFLANK DGTSPLYLAV EAGNVSLVRA MLNRPGNKIQ GKTSTLASQL EGRKSLLHAA LKAKNTDVLN VILNDDPSLV NERDEEGRTC LSVGASMGYY
401: KGICKLLDRS TKSVYECDKD GSFPIHMAVE KGHLKVVKEI LKRCPDSKEL VNKQGQNMLH IAAKSAKVGS FLLGYIRRLD TENHLIEEQD VDGNAPLHLA
501: TINWRCRTVD KLAAFASTET KILNIQNKDG LRPLDIAELN LQPDYVLRER LTLMVLLCVY APKSVGWLPT SGMTLRSRSE PLDAKKYKDH INALLLVATL
601: VATVTFAAGF TIPGGFNSSA PNMGMATLAD DSTLFFFLVL DTLAMQSSIV AIVALI
Arabidopsis Description
Ankyrin repeat family protein [Source:UniProtKB/TrEMBL;Acc:F4JG86]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.