Factsheet for Bra026987.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY26542	Canola	cytosol	88.21	88.21
AT1G12150.2	Thale cress	cytosol	44.7	82.3
Bra016786.1-P	Field mustard	cytosol	43.61	80.44
KRH36620	Soybean	cytosol, mitochondrion, nucleus	24.18	42.29
KRH11615	Soybean	cytosol, mitochondrion, nucleus	23.49	41.15
KRH51206	Soybean	cytosol	21.9	40.18
KRH01945	Soybean	cytosol, mitochondrion, nucleus	22.6	39.72
Bra021064.1-P	Field mustard	cytosol	18.24	35.32
GSMUA_Achr7P16580_001	Banana	cytosol	21.31	34.9
Bra026233.1-P	Field mustard	cytosol	17.94	34.74
GSMUA_Achr4P18510_001	Banana	nucleus	20.52	33.77
Os12t0271600-01	Rice	plasma membrane	21.41	33.38
TraesCS4B01G127500.1	Wheat	nucleus	20.91	33.28
TraesCS4A01G188200.1	Wheat	nucleus	20.81	33.02
TraesCS4D01G125200.1	Wheat	nucleus	20.71	32.97
OQU79020	Sorghum	nucleus	21.01	32.57
Zm00001d023629_P001	Maize	nucleus	20.61	31.9
Zm00001d041088_P004	Maize	nucleus	20.22	31.43
TraesCS5A01G098800.2	Wheat	cytosol	19.72	31.14
TraesCS5B01G103500.1	Wheat	nucleus	19.72	31.14
TraesCS5D01G110400.2	Wheat	cytosol	19.72	31.14
PGSC0003DMT400050839	Potato	nucleus	18.83	30.6
Bra002870.1-P	Field mustard	nucleus	19.72	30.47
HORVU5Hr1G029890.1	Barley	nucleus	19.33	30.23
Bra028956.1-P	Field mustard	nucleus	19.03	29.81
PGSC0003DMT400034621	Potato	mitochondrion, plastid	13.18	29.49
Solyc04g015110.2.1	Tomato	plastid	18.04	29.21
GSMUA_AchrUn_...	Banana	nucleus	18.14	28.91
Bra041137.1-P	Field mustard	nucleus	11.2	20.14
Bra034308.1-P	Field mustard	nucleus	12.19	19.01
Bra040259.1-P	Field mustard	nucleus	13.18	18.17
Bra033647.1-P	Field mustard	nucleus	12.98	18.17
Bra014049.1-P	Field mustard	nucleus	12.88	17.24

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra026987	EnsemblPlants:Bra026987.1	EnsemblPlants:Bra026987.1-P
ncoils:Coil	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4EDX7
PFAM:PF00646	PFAM:PF01535	PFAM:PF05701	PFAM:PF07734	PFAM:PF13041	PFscan:PS50181
PFscan:PS51375	PANTHER:PTHR32054	PANTHER:PTHR32054:SF20	InterPro:Pentatricopeptide_repeat	SMART:SM00256	SUPFAM:SSF81383
TIGRFAMs:TIGR00756	TIGRFAMs:TIGR01640	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002542902	InterPro:Web	SEG:seg

Description

AT1G12150 (E=5e-213) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT4G17210.1); Has 136823 Blast hits to 68042 proteins in 2292 species: Archae - 1576; Bacteria - 22165; Metazoa - 64188; Fungi - 9966; Plants - 5333; Viruses - 600; Other Eukaryotes - 32995 (source: NCBI BLink).

Coordinates

chrA09:+:34633346..34637783

Molecular Weight (calculated)

114883.0 Da

IEP (calculated)

5.791

GRAVY (calculated)

-0.590

Length

1009 amino acids

Sequence
(BLAST)

0001: MKLPCELVEE ILYRVPPLSL LRCKTVCKQW NTLLNHLSLV RPQLLIWTGP KIYSVGVSLK DDPKIDIREL PVDNPYLKNN NNPIPYNFLP SDGLLFCVPR
0101: WGNINRVVVW NPWLRQTRLI VPQENCFTFG GIGYDSGRPE KGYKVFGYRF LDRKLNNGKV QVYRRLAIYK FETNEWKYID SMNEDESSQI GIGISFDKNV
0201: SLNGNLYWIA YNVKTGEYLI RCFDFSKETI KLFCVLPWKD DSSDVPILSA YRRDRFSVLK QFNETNKIEI WVTENKISGD GANVVWMKFM TVSIPFDKDF
0301: CPSYFIDNNT YGKSLVMCCK DEDKNACIYV VKGNASTKIP IGFDVYEIMA NIRVQKGPES PRTEVGEIDT RAPFQSVKAA VSLFGEVVSR QRSTPRRSRL
0401: SSESVCDKET QLMLAHKQFL KIKQKLDNAE ITRSRALSDL SNAKKTMEEL TNKLEAVNKS KQTAIDTKET VQQREEQLEH DKSHGSPPHH HELDVAREQY
0501: LSTTVELDAA KQQLNKIRQS FDSAMDLKAT ALNQAAEAKR ALQVNSAKVS ELSKEIGDMK DAIHQLKLAA TQNLEEYANI VKEKDDLREC YKTAVEEAEK
0601: KLLVLRKEYH PELSRNLEAK LIETTSEIEV LREEMKKAHE SEMNTVKIIT NELNEATMKL QEAADEEGSL RSVVNSLRME LEEMRREREE LQQREAERLE
0701: DEERKKVEAL KEESLKLEEM KQEALVARNE AEEMNRKIGS LKKETDSAMV AAEEAEKRLE LVISKVEEAK AAEEKVREEM KMISQKQESK KQDEESSGSK
0801: IKITVQEFES LKRGAGETET AIEKKLAGIA AELEEMNTRK AEADNKLGAS LKAIEEMKHA TDLAQKAADS AEAAKSVVES TLRNAYEFFC ERGFSSGLTS
0901: DRNLSYKEKL RSGIVGIKKD DAGGLCKKGS LSEARLLLRK MEEDGIAPDS GPYNTLIRAH LRDGDVSISV ELIEEMKRCG FSADASTVKI VMDMLSDGRL
1001: DRSFLDMLS

Best Arabidopsis Sequence Match ( AT1G12150.2 )
(BLAST)

001: MVNIRVQKAP ESPRTMEVGE IDTRAPFQSV KAAVSLFGEV AVSKQRSTPR RSRLSSESVC DKETQLMLVH KEFMKIKQKL DNAESTRSRA LDDLSKAKKT
101: MEDLSNKLET VNKSKQSAID TKETVQQREE QLEHDKCHGS PPHHHELDVA REQYISTTVE LDAAKQQLNK IRQSFDSAMD FKATALNQAA EAQRALQVNS
201: AKVNELSKEI SDMKDAIHQL KLAAAQNLQE HANIVKEKDD LRECYRTAVE EAEKKLLVLR KEYEPELSRT LEAKLLETTS EIEVLREEMK KAHESEMNTV
301: KIITNELNEA TMRLQEAADD ECSLRSLVNS LRMELEDLRR EREELQQKEA ERLEIEETKK LEALKQESLK LEQMKTEAIE ARNEAANMNR KIESLKKETE
401: AAMIAAEEAE KRLELVIREV EEAKSAEEKV REEMKMISQK QESKKQDEES SGSKIKITIQ EFESLKRGAG ETEAAIEKKL ATIAAELEEI NKRRAEADNK
501: LEANLKAIEE MKQATELAQK SAESAEAAKR MVESELQRWR QQENVQLA

Arabidopsis Description

WEB family protein At1g12150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.