CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026987.1-P	Field mustard	cytosol	88.21	88.21
CDY31245	Canola	cytosol	43.31	79.74
AT1G12150.2	Thale cress	cytosol	43.11	79.38
CDY21038	Canola	cytosol	42.81	78.98
CDY15972	Canola	cytosol	52.92	59.53
KRH36620	Soybean	cytosol, mitochondrion, nucleus	23.49	41.07
KRH51206	Soybean	cytosol	22.3	40.91
KRH11615	Soybean	cytosol, mitochondrion, nucleus	23.09	40.45
KRH01945	Soybean	cytosol, mitochondrion, nucleus	22.2	39.02
CDY11974	Canola	cytosol, nucleus, plastid	10.6	36.9
CDY58167	Canola	cytosol	18.24	35.38
GSMUA_Achr7P16580_001	Banana	cytosol	21.41	35.06
CDY42964	Canola	cytosol	17.94	34.81
CDY50127	Canola	cytosol	18.04	34.8
CDY35594	Canola	nucleus	17.94	34.61
GSMUA_Achr4P18510_001	Banana	nucleus	20.71	34.09
CDY09639	Canola	cytosol	17.84	33.9
CDX90485	Canola	cytosol	17.54	33.4
TraesCS4B01G127500.1	Wheat	nucleus	20.91	33.28
Os12t0271600-01	Rice	plasma membrane	21.21	33.08
TraesCS4D01G125200.1	Wheat	nucleus	20.61	32.81
TraesCS4A01G188200.1	Wheat	nucleus	20.61	32.7
OQU79020	Sorghum	nucleus	20.71	32.1
Zm00001d023629_P001	Maize	nucleus	20.52	31.75
Zm00001d041088_P004	Maize	nucleus	20.12	31.28
TraesCS5D01G110400.2	Wheat	cytosol	19.62	30.99
TraesCS5B01G103500.1	Wheat	nucleus	19.62	30.99
TraesCS5A01G098800.2	Wheat	cytosol	19.62	30.99
CDY11973	Canola	nucleus	19.72	30.95
CDY17364	Canola	nucleus	20.02	30.93
PGSC0003DMT400050839	Potato	nucleus	19.03	30.92
CDY36768	Canola	nucleus	19.72	30.85
CDY28631	Canola	nucleus	19.72	30.52
HORVU5Hr1G029890.1	Barley	nucleus	19.13	29.92
Solyc04g015110.2.1	Tomato	plastid	18.34	29.7
PGSC0003DMT400034621	Potato	mitochondrion, plastid	13.08	29.27
GSMUA_AchrUn_...	Banana	nucleus	18.14	28.91
CDY22380	Canola	nucleus	13.38	18.78
CDX71526	Canola	nucleus	13.18	18.37
CDY46119	Canola	nucleus	12.29	18.26
CDX72400	Canola	nucleus	12.19	18.09
CDY48180	Canola	nucleus	13.08	17.89
CDX68971	Canola	mitochondrion, nucleus, plastid	14.27	17.87
CDY62582	Canola	nucleus	12.78	17.62
CDX77048	Canola	nucleus	12.98	17.31
CDY17108	Canola	nucleus	12.29	16.96
CDY17054	Canola	nucleus	11.79	16.76
CDY43212	Canola	nucleus	11.79	16.67
CDY35593	Canola	cytosol	3.07	9.2

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078GMZ4	EnsemblPlants:CDY26542	ProteinID:CDY26542
ProteinID:CDY26542.1	ncoils:Coil	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00035400001	InterPro:IPR001810	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF00646	PFAM:PF01535	PFAM:PF05701	PFAM:PF07734	PFAM:PF13041
PFscan:PS50181	PFscan:PS51375	PANTHER:PTHR32054	PANTHER:PTHR32054:SF20	InterPro:Pentatricopeptide_repeat	SMART:SM00256
SUPFAM:SSF81383	TIGRFAMs:TIGR00756	TIGRFAMs:TIGR01640	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EDD629	InterPro:Web
SEG:seg	:	:	:	:	:

Description

BnaA09g47350DBnaA09g47350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMZ4]

Coordinates

chrLK032192:-:43581..48017

Molecular Weight (calculated)

115227.0 Da

IEP (calculated)

6.102

GRAVY (calculated)

-0.618

Length

1009 amino acids

Sequence
(BLAST)

0001: MKLPCELVEE ILYRVPPLSL LRCKTVCKQW NTLLNHLSLV RPQLLIWTGP KIYSVGVSLK DDPKIDIREL PVDNPYLKNN NNPIPYNFLP SDGLLFCVPR
0101: WGNINRVVVW NPWLRQTRLI VPQENCFTFG GIGYDSGRPE KGYKVFGYRF LDRKLNNGKV QVYRRLAIYK FETNEWKYID SMNEDESSQI GIGISFDKNV
0201: SLNGNLYWIA YNVKTGEYLI RCFDFSKETI KLFCVLPWKD DSSDVPILSA YRRDRFSVLK QFNETNKIEI WVTENKISGD GANVVWMKFM TVSIPFDKDF
0301: CPSYFIDNNT YGKSLVMCCK DEDKNACIYV VKGNASTKIP IGFDVYERMA NIRVQKGPES PRTEVGEIDT RAPFQSVKAA VSLFGEVVSR QRSTPRRSRL
0401: SSESVCDKET QLMLAHKQFL KIKQKLDNAE ITRSRALSDL SNAKKTMEEL TNKLEAVNKS KQTAIDTKET VQQREEQLEH DKSHGSPPHH HELDVAREQY
0501: LSTTIELDAA KQQLNKIRQS FDSAMDLKAT ALNQAAEAKR ALQVNSAKVS ELSKEIGDMK DAIHQLKLAA TQNLEEYANI VKEKDDLREC YKTAVEEAEK
0601: KLLVLRKEYH PELSRNLEAK LIETTSEIEV LREEMKKAHE SEMNTVKIIT NELNEATMKL QEAADEEGSL RSLVNSLRME LEEMRREREE LQRREAERLE
0701: TEERKKVEAL KEESLKLEEM KQEALVARNE AEDMNRKIES LKKETDSAMI AAEETEKRLE LVISKVEEAK AAEEKVREEM KMISQKKESK KQDEESSGSK
0801: IKITVQEFES LKRGAGETEK EVEKKLADIA AELEEMNKRK AEADNKLGAS LKAIEEMKHA TDLAQKAADS AEAAKSVVES TLRNAYEFFC ERGFSSGLTS
0901: DRNLSYKEKL RSGIVGIKKD DAGGLCKKGS LSEARLLLRK MEEDGIAPDS GPYNTLIRAH LRDGDVSISV ELIEEMKRCG FSADASTVKI VMDMLSDGRL
1001: DRSFLDMLS

Best Arabidopsis Sequence Match ( AT1G12150.2 )
(BLAST)

001: MVNIRVQKAP ESPRTMEVGE IDTRAPFQSV KAAVSLFGEV AVSKQRSTPR RSRLSSESVC DKETQLMLVH KEFMKIKQKL DNAESTRSRA LDDLSKAKKT
101: MEDLSNKLET VNKSKQSAID TKETVQQREE QLEHDKCHGS PPHHHELDVA REQYISTTVE LDAAKQQLNK IRQSFDSAMD FKATALNQAA EAQRALQVNS
201: AKVNELSKEI SDMKDAIHQL KLAAAQNLQE HANIVKEKDD LRECYRTAVE EAEKKLLVLR KEYEPELSRT LEAKLLETTS EIEVLREEMK KAHESEMNTV
301: KIITNELNEA TMRLQEAADD ECSLRSLVNS LRMELEDLRR EREELQQKEA ERLEIEETKK LEALKQESLK LEQMKTEAIE ARNEAANMNR KIESLKKETE
401: AAMIAAEEAE KRLELVIREV EEAKSAEEKV REEMKMISQK QESKKQDEES SGSKIKITIQ EFESLKRGAG ETEAAIEKKL ATIAAELEEI NKRRAEADNK
501: LEANLKAIEE MKQATELAQK SAESAEAAKR MVESELQRWR QQENVQLA

Arabidopsis Description

WEB family protein At1g12150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.