CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46119	Canola	nucleus	80.59	80.71
AT4G33390.1	Thale cress	nucleus	67.35	58.79
CDX68971	Canola	mitochondrion, nucleus, plastid	65.29	55.09
Solyc05g042150.1.1	Tomato	cytosol	15.29	54.17
Solyc07g026880.1.1	Tomato	cytosol	12.21	53.9
Solyc04g078950.1.1	Tomato	nucleus	23.09	51.48
CDY48180	Canola	nucleus	52.65	48.51
CDX77048	Canola	nucleus	53.38	47.95
VIT_18s0001g10560.t01	Wine grape	nucleus	51.91	41.82
KRH07566	Soybean	nucleus	36.76	40.65
Solyc07g022910.2.1	Tomato	plastid	50.29	40.38
CDY22380	Canola	nucleus	41.91	39.64
Solyc08g015840.1.1	Tomato	cytosol	11.32	39.29
Solyc12g088830.1.1	Tomato	nucleus	48.24	38.91
PGSC0003DMT400039921	Potato	nucleus	48.97	38.9
KRH45361	Soybean	nucleus	33.09	38.4
CDX71526	Canola	nucleus	40.44	37.98
CDY17108	Canola	nucleus	40.74	37.89
PGSC0003DMT400011385	Potato	nucleus	50.29	37.87
TraesCS1D01G248300.1	Wheat	nucleus, plastid	39.85	37.8
CDY43212	Canola	nucleus	38.97	37.11
CDY17054	Canola	nucleus	38.53	36.9
Os03t0395300-01	Rice	plasma membrane	41.32	36.21
CDY62582	Canola	nucleus	38.53	35.79
Zm00001d029420_P002	Maize	nucleus	40.59	35.2
HORVU2Hr1G030630.1	Barley	nucleus	41.03	35.18
KRH51982	Soybean	nucleus	49.12	35.05
TraesCS1B01G259500.1	Wheat	nucleus	39.26	34.95
PGSC0003DMT400020677	Potato	nucleus	49.71	34.85
GSMUA_Achr6P10120_001	Banana	nucleus	44.85	34.78
Zm00001d022161_P001	Maize	nucleus	40.88	34.75
TraesCS1A01G248800.1	Wheat	nucleus	39.71	34.62
KRH61284	Soybean	nucleus	49.26	34.43
TraesCS2A01G166400.1	Wheat	cytosol	40.15	34.43
KXG36701	Sorghum	nucleus	41.32	34.06
EER92167	Sorghum	nucleus	39.12	33.93
GSMUA_Achr5P17590_001	Banana	nucleus	40.74	33.78
TraesCS2B01G192300.1	Wheat	nucleus	41.47	33.53
Os07t0619100-01	Rice	plasma membrane	40.15	33.41
GSMUA_Achr9P27100_001	Banana	nucleus	39.85	32.97
TraesCS2D01G173700.1	Wheat	nucleus	40.44	32.7
Zm00001d047240_P002	Maize	nucleus	37.5	32.48
KRH15355	Soybean	nucleus	47.94	32.28
GSMUA_Achr10P...	Banana	cytosol	38.68	32.27
GSMUA_Achr5P24580_001	Banana	cytosol	29.12	31.53
Os06t0314000-01	Rice	cytosol, nucleus	22.65	30.43
HORVU1Hr1G062330.8	Barley	nucleus	40.44	30.42
TraesCS4B01G300400.1	Wheat	nucleus	32.94	25.9
CDY28631	Canola	nucleus	20.44	21.32
CDY17364	Canola	nucleus	20.44	21.29
CDY36768	Canola	nucleus	19.85	20.93
CDY31245	Canola	cytosol	16.62	20.62
CDY21038	Canola	cytosol	16.47	20.48
CDY11973	Canola	nucleus	19.26	20.37
CDY42964	Canola	cytosol	15.15	19.81
CDY50127	Canola	cytosol	14.71	19.12
CDX90485	Canola	cytosol	14.85	19.06
CDY58167	Canola	cytosol	14.41	18.85
CDY09639	Canola	cytosol	14.71	18.83
CDY35594	Canola	nucleus	14.41	18.74
CDY11974	Canola	cytosol, nucleus, plastid	7.94	18.62
CDY15972	Canola	cytosol	18.24	13.82
CDY26542	Canola	cytosol	18.09	12.19
CDY35593	Canola	cytosol	6.03	12.17

Protein Annotations

EnsemblPlants:CDX72400	EnsemblPlantsGene:GSBRNA2T00099893001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2
PFAM:PF05701	ProteinID:CDX72400	ProteinID:CDX72400.1	SEG:seg	UniParc:UPI0004EDF437	MapMan:35.1

Description

BnaC07g44220D

Coordinates

chrLK031796:+:1051113..1053234

Molecular Weight (calculated)

76581.1 Da

IEP (calculated)

4.714

GRAVY (calculated)

-0.804

Length

680 amino acids

Sequence
(BLAST)

001: MEDLKLTEVV SPPPEEPSVT SNVVELEQPQ ANEAMQQSQA NEDSTQNGKV YMDDTFFPTS LSSSQAEETQ DSSSYSNTTT PVFVSEIGLP SVKTKYRSEG
101: TTTRKRSLSS QRSLGTPRTL GSSSPLSNET PKSLDSYKDS IDTTSPIESV KEAVSKFGGI TDWKAHKMQV LERRKFVEQE LKEIEEQIPE HKKQSETVEM
201: SKLLAVEELE STKRLIEELK LNLEKAETEE KQAKQDSDLA KMRVEEMEQG VAGEASVAAK AQLEVAQARH TSAISELESV EEEIQTLQKE HDGLVREKDL
301: AVKEAAEAVL ASKEVEKKVE ELSIELIATK ESLECAHSSH LEAEELQRLM KNFVSQTDVA SAKKELEEVY VNIEKATSEV KCLKVASSSL RVEIEKERSA
401: LESIKQREGM ASVAVASLEA EIDITRFEIA LVESKEKEVR EEMVELPKQL QQASQEADEA KSFAKLASEE LRKSQEEAEK AKAGASAMEG RLLAAQKEIE
501: DVKASERFAL AAIKALQESE YDLEEKNSVT LTLEEYYELS KRAKEAEERV AAAVCEIEEA KEEEKRRLEK LEEVNKEMVL RKERLAEVTE KAEKAKEGKL
601: GVEQELRKWR EEHKVKRKNV ENGVKIEESH ERSLEGSKEK ENESSGTETN TIPPEIPVKK KKKFFPRIFM FLMKKKKSPK

Best Arabidopsis Sequence Match ( AT4G33390.1 )
(BLAST)

001: MEDLKTTDAL SLPVVSDNGG IIEPELQLPQ AIPTELENNE EENGTIQQSQ SEEDSAENGK IYMDDTFLPS KSQVKETQDS PTTPSFVSPS AEIVLPRVNT
101: KYEAEGTTRN AVSPRPLYSP RSIGSPRALL SPRFAGSSSP LSNGTPISMD SFRDSIDTAS PFESVKEAVS KFGGITDWKA HRMKVLERRN FVEQELDKIQ
201: EEIPEYKKKS EMVEMSKMLA VEELESTKRL IEELKLNLEK AETEEQQAKQ DSELAKLRVQ EMEQGIADEA SVASKAQLEV AQARHTSAIS ELESVKEELQ
301: TLQNEYDALV KEKDLAVKEA EEAVIASKEV ERKVEELTIE LIATKESLEC AHSSHLEAEE HRIGAAMLRD QETHRWEKEL KQAEEELQRL KQHLVSTKEL
401: QVKLEFASAL LLDLKKELAD HKESSKVKEE TSETVVTNIE ISLQEKTTDI QKAVASAKKE LEEVNANVEK ATSEVNCLKV ASSSLRLEID KEKSALDSLK
501: QREGMASVTV ASLEAEIDIT RCEIALVKSK EKETREEMVE LPKQLQQASQ EADEAKSFAE LAREELRKSQ EEAEQAKAGA STMESRLFAA QKEIEAIKAS
601: ERLALAAIKA LQESESSSKE NAVDSPRTVT LTIEEYYELS KRAHEAEEAA NARVAAAVSE VGEAKETEKR SLEKLEEVNK EMVERKATLA GAMEKAEKAK
701: EGKLGVEQEL RKWREVSEKK RKNGSSHGKS IQGSKEKEAE TSVSNETETN PIPQVNPVKK KKKLFPRFFM FLMKKKSHK

Arabidopsis Description

WEL1Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.