Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G030630.1 | Barley | nucleus | 89.91 | 89.91 |
| TraesCS2D01G173700.1 | Wheat | nucleus | 86.89 | 81.93 |
| TraesCS2B01G192300.1 | Wheat | nucleus | 84.36 | 79.55 |
| Os07t0619100-01 | Rice | plasma membrane | 57.25 | 55.57 |
| Zm00001d022161_P001 | Maize | nucleus | 55.74 | 55.25 |
| KXG36701 | Sorghum | nucleus | 56.37 | 54.18 |
| Solyc05g042150.1.1 | Tomato | cytosol | 12.48 | 51.56 |
| Solyc07g026880.1.1 | Tomato | cytosol | 9.84 | 50.65 |
| Bra034308.1-P | Field mustard | nucleus | 39.85 | 48.84 |
| TraesCS1A01G248800.1 | Wheat | nucleus | 46.28 | 47.05 |
| Solyc04g078950.1.1 | Tomato | nucleus | 17.65 | 45.9 |
| CDY48180 | Canola | nucleus | 41.61 | 44.72 |
| CDX77048 | Canola | nucleus | 42.24 | 44.25 |
| AT2G26570.1 | Thale cress | nucleus | 43.88 | 43.12 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 46.91 | 42.42 |
| CDY46119 | Canola | nucleus | 36.19 | 42.27 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 44.89 | 42.18 |
| AT4G33390.1 | Thale cress | nucleus | 40.61 | 41.34 |
| Bra041137.1-P | Field mustard | nucleus | 29.13 | 41.18 |
| PGSC0003DMT400039921 | Potato | nucleus | 44.01 | 40.77 |
| Solyc07g022910.2.1 | Tomato | plastid | 43.13 | 40.38 |
| CDX72400 | Canola | nucleus | 34.43 | 40.15 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 41.11 | 39.76 |
| Solyc12g088830.1.1 | Tomato | nucleus | 41.87 | 39.38 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 39.72 | 39.08 |
| PGSC0003DMT400011385 | Potato | nucleus | 44.39 | 38.98 |
| KRH07566 | Soybean | nucleus | 29.89 | 38.54 |
| GSMUA_Achr10P... | Banana | cytosol | 39.34 | 38.28 |
| CDY22380 | Canola | nucleus | 34.68 | 38.25 |
| Bra033647.1-P | Field mustard | nucleus | 34.68 | 38.14 |
| KRH45361 | Soybean | nucleus | 27.62 | 37.37 |
| CDX71526 | Canola | nucleus | 33.54 | 36.74 |
| Solyc08g015840.1.1 | Tomato | cytosol | 9.08 | 36.73 |
| AT5G42880.1 | Thale cress | nucleus | 33.67 | 35.55 |
| PGSC0003DMT400020677 | Potato | nucleus | 43.25 | 35.36 |
| KRH51982 | Soybean | nucleus | 42.24 | 35.15 |
| AT1G45545.2 | Thale cress | nucleus | 32.91 | 34.66 |
| CDY43212 | Canola | nucleus | 30.64 | 34.03 |
| CDY17054 | Canola | nucleus | 30.14 | 33.66 |
| KRH61284 | Soybean | nucleus | 40.86 | 33.3 |
| Bra014049.1-P | Field mustard | nucleus | 31.65 | 33.29 |
| KRH15355 | Soybean | nucleus | 41.99 | 32.97 |
| Bra040259.1-P | Field mustard | nucleus | 30.14 | 32.65 |
| CDY17108 | Canola | nucleus | 29.89 | 32.42 |
| TraesCS5A01G238500.1 | Wheat | cytosol | 32.16 | 32.28 |
| CDY62582 | Canola | nucleus | 29.76 | 32.24 |
| TraesCS5A01G098800.2 | Wheat | cytosol | 20.43 | 25.35 |
| TraesCS4A01G188200.1 | Wheat | nucleus | 20.18 | 25.16 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G166400.1 | EnsemblPlantsGene:TraesCS2A01G166400 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF16 |
| PFAM:PF05701 | SEG:seg | MapMan:20.5.8.1 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:118670855..118673433
Molecular Weight (calculated)
88240.3 Da
IEP (calculated)
4.909
GRAVY (calculated)
-0.774
Length
793 amino acids
Sequence
(BLAST)
(BLAST)
001: MESTHASEEN NSKESSPVEI PETCVDSPTL EVSSNGVHEN INANMEKSAQ AATSGISNGL PVAADDSELS SHSEVLAESH PDVAEHDVES NSPTGAGPEM
101: LSNSVPTEKS KHSVKGQADH SSSVHPVEVN HVEDKARFQR KIAVKPKVME ESEAKPESPY KGLIDTAAPF ESVREAVTKF GGIVDWKAHK VQMMERRKFI
201: QLELENAQKE IPKCKEELEA AEMAKSQVLD ELETTKRIVE ELKHELEKAQ MEEVQAKQDS ELAQLRVQEI ERGVADDSSV IAKTQMEVAK ERHEKSVAEL
301: KSVKEELRTL HEEYASLVNE RDRAIKRAEE VLAAGKDIEK RVEGLTVELI AAKGSLELAH AAHHDAEERR IGAVLAKEQD CLAWDRELVQ AQEEVQQLNN
401: KLLSQNDLKK NLEANLRKLH GLKSELADYV ESILCKEALG VAKEHESEDA RQISSSIKET LASTQKELEE VKANIENTKT EAKLLRVAAT TLRSELDREK
501: ASLDSLQQRE VMASIAVSSL EAELNRTQKE IESVRSKEED AQEKMVELPK MLQQAAQEAE DAKDAAQAAE EELRKAKEDT EQTKAAATTT SSRLCAVLKE
601: IEASKASERL ALAAVRALNE SKEASDVEDS PRGVTLPISE YYALSKKAQD AEELANEKVT EALAQVESVK GSELESLDRL TEATKEMDEK KRTLELALER
701: AERANEGKLA AEQQLRKWRS DHEQRRKIQE AAKRAVNPVS SPFVDPYLKE QDSRLHMSGS SYEDHVPNRK LRKKKSFLPR MGSFLSRNTP AQT
101: LSNSVPTEKS KHSVKGQADH SSSVHPVEVN HVEDKARFQR KIAVKPKVME ESEAKPESPY KGLIDTAAPF ESVREAVTKF GGIVDWKAHK VQMMERRKFI
201: QLELENAQKE IPKCKEELEA AEMAKSQVLD ELETTKRIVE ELKHELEKAQ MEEVQAKQDS ELAQLRVQEI ERGVADDSSV IAKTQMEVAK ERHEKSVAEL
301: KSVKEELRTL HEEYASLVNE RDRAIKRAEE VLAAGKDIEK RVEGLTVELI AAKGSLELAH AAHHDAEERR IGAVLAKEQD CLAWDRELVQ AQEEVQQLNN
401: KLLSQNDLKK NLEANLRKLH GLKSELADYV ESILCKEALG VAKEHESEDA RQISSSIKET LASTQKELEE VKANIENTKT EAKLLRVAAT TLRSELDREK
501: ASLDSLQQRE VMASIAVSSL EAELNRTQKE IESVRSKEED AQEKMVELPK MLQQAAQEAE DAKDAAQAAE EELRKAKEDT EQTKAAATTT SSRLCAVLKE
601: IEASKASERL ALAAVRALNE SKEASDVEDS PRGVTLPISE YYALSKKAQD AEELANEKVT EALAQVESVK GSELESLDRL TEATKEMDEK KRTLELALER
701: AERANEGKLA AEQQLRKWRS DHEQRRKIQE AAKRAVNPVS SPFVDPYLKE QDSRLHMSGS SYEDHVPNRK LRKKKSFLPR MGSFLSRNTP AQT
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.