Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU1Hr1G062330.8 | |
| HORVU2Hr1G030630.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26570.1 | HORVU1Hr1G062330.8 | AT2G26570.1 | 20974974 |
| AT2G26570.1 | HORVU2Hr1G030630.1 | AT2G26570.1 | 20974974 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G166400.1 | Wheat | cytosol | 89.91 | 89.91 |
| TraesCS2D01G173700.1 | Wheat | nucleus | 85.37 | 80.5 |
| TraesCS2B01G192300.1 | Wheat | nucleus | 83.23 | 78.48 |
| Os07t0619100-01 | Rice | plasma membrane | 56.87 | 55.2 |
| Zm00001d022161_P001 | Maize | nucleus | 55.61 | 55.12 |
| KXG36701 | Sorghum | nucleus | 57.25 | 55.03 |
| Solyc05g042150.1.1 | Tomato | cytosol | 12.86 | 53.12 |
| Solyc07g026880.1.1 | Tomato | cytosol | 10.21 | 52.6 |
| Bra034308.1-P | Field mustard | nucleus | 40.1 | 49.15 |
| Solyc04g078950.1.1 | Tomato | nucleus | 18.03 | 46.89 |
| CDY48180 | Canola | nucleus | 42.37 | 45.53 |
| CDX77048 | Canola | nucleus | 42.88 | 44.91 |
| AT2G26570.1 | Thale cress | nucleus | 44.14 | 43.37 |
| CDY46119 | Canola | nucleus | 36.32 | 42.42 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 45.02 | 42.3 |
| AT4G33390.1 | Thale cress | nucleus | 41.24 | 41.98 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 46.28 | 41.85 |
| PGSC0003DMT400039921 | Potato | nucleus | 44.77 | 41.47 |
| Bra041137.1-P | Field mustard | nucleus | 29.26 | 41.35 |
| HORVU1Hr1G062330.8 | Barley | nucleus | 46.91 | 41.15 |
| CDX72400 | Canola | nucleus | 35.18 | 41.03 |
| Solyc07g022910.2.1 | Tomato | plastid | 43.76 | 40.97 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 41.99 | 40.61 |
| Solyc12g088830.1.1 | Tomato | nucleus | 42.62 | 40.09 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 40.23 | 39.58 |
| PGSC0003DMT400011385 | Potato | nucleus | 44.89 | 39.42 |
| Solyc08g015840.1.1 | Tomato | cytosol | 9.58 | 38.78 |
| CDY22380 | Canola | nucleus | 34.93 | 38.53 |
| Bra033647.1-P | Field mustard | nucleus | 34.93 | 38.42 |
| KRH07566 | Soybean | nucleus | 29.63 | 38.21 |
| GSMUA_Achr10P... | Banana | cytosol | 38.84 | 37.79 |
| KRH45361 | Soybean | nucleus | 27.36 | 37.03 |
| CDX71526 | Canola | nucleus | 33.8 | 37.02 |
| AT5G42880.1 | Thale cress | nucleus | 34.17 | 36.09 |
| PGSC0003DMT400020677 | Potato | nucleus | 43.51 | 35.57 |
| KRH51982 | Soybean | nucleus | 41.74 | 34.73 |
| AT1G45545.2 | Thale cress | nucleus | 32.66 | 34.4 |
| CDY43212 | Canola | nucleus | 30.52 | 33.89 |
| CDY17054 | Canola | nucleus | 30.14 | 33.66 |
| KRH61284 | Soybean | nucleus | 41.11 | 33.5 |
| Bra014049.1-P | Field mustard | nucleus | 31.53 | 33.16 |
| KRH15355 | Soybean | nucleus | 41.36 | 32.48 |
| HORVU5Hr1G068440.1 | Barley | cytosol | 32.66 | 32.38 |
| Bra040259.1-P | Field mustard | nucleus | 29.63 | 32.1 |
| CDY62582 | Canola | nucleus | 29.51 | 31.97 |
| CDY17108 | Canola | nucleus | 29.38 | 31.87 |
| HORVU4Hr1G089990.4 | Barley | cytosol, nucleus, plastid | 26.99 | 28.05 |
| HORVU5Hr1G029890.1 | Barley | nucleus | 19.92 | 24.5 |
Protein Annotations
| EnsemblPlants:HORVU2Hr1G030630.1 | EnsemblPlantsGene:HORVU2Hr1G030630 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF16 |
| PFAM:PF05701 | SEG:seg | UniParc:UPI00029549C1 | UniProt:M0Y5L8 | MapMan:20.5.8.1 | : |
Description
No Description!
Coordinates
chrchr2H:-:113046741..113051344
Molecular Weight (calculated)
88506.7 Da
IEP (calculated)
4.950
GRAVY (calculated)
-0.760
Length
793 amino acids
Sequence
(BLAST)
(BLAST)
001: MESTHASEEN NSKESSLVQI PETYVDSPTL EVSSNGVHEN INANMEKSAQ AATSGISNGL PVAANDSELS SHSQVLAKSH PDVTEHGVES NSSTGTGPEI
101: LSNSGPTETS THSVKGQAEH SSSVYPVEVN HVEYKTRFQR KIAVKPKVIE ESEAKPESPY KGLIDTAAPF ESVREAVTKF GGIVDWKAHK VQMLERRKFI
201: QLELENAQKE IPQCKEELEA AEMAKSRVLD ELETTKRIIE ELKHELEKAQ MEEVQAKQDS ELAQLRVQEI ERGVADDSSV IAKTQMEVAK ERHDKSVAEL
301: TSVKEELRTL REEYDTLVNE RDRAIKRAEE VLSAGKDIEK RVEGLTVELI ASKGCLELAH AAHHDAEERR IGAVLAKEQD CLAWDRELLQ AQEELQQLNN
401: KLMSQNDLKK NLDANLRKLH VLKSELADYV ESILCKEALG VAKEHESEDV RQISSSIKET LASTQKELEE VKANIENTKT EAKLLRVAAT TLRAELDREK
501: ASLETLQQRE VMASIAVSSL EAELNRTQKE IESVRSKEED AQEKMVELPK MLQQAAQEAE DAKEAAQAAE EELRKAKEDT EQTKAAATTT SSRLCAVLKE
601: IEASKASERL ALAAVQALKE SKEASDVEDS PRGVTLPLSE YYALSKKAQE AEELANEKVT EALAQVESAK GSELESLDRL TEATKEMDEK KRTLELALER
701: AERANEGKLA AEQQLRKWRS DHEQRRKIQE AAKRAVNTVS SPFVDTYLKE QDSRLHMSGS SYEDHVPNRK LRKKKSFLPR MGSFLSRNTP AQT
101: LSNSGPTETS THSVKGQAEH SSSVYPVEVN HVEYKTRFQR KIAVKPKVIE ESEAKPESPY KGLIDTAAPF ESVREAVTKF GGIVDWKAHK VQMLERRKFI
201: QLELENAQKE IPQCKEELEA AEMAKSRVLD ELETTKRIIE ELKHELEKAQ MEEVQAKQDS ELAQLRVQEI ERGVADDSSV IAKTQMEVAK ERHDKSVAEL
301: TSVKEELRTL REEYDTLVNE RDRAIKRAEE VLSAGKDIEK RVEGLTVELI ASKGCLELAH AAHHDAEERR IGAVLAKEQD CLAWDRELLQ AQEELQQLNN
401: KLMSQNDLKK NLDANLRKLH VLKSELADYV ESILCKEALG VAKEHESEDV RQISSSIKET LASTQKELEE VKANIENTKT EAKLLRVAAT TLRAELDREK
501: ASLETLQQRE VMASIAVSSL EAELNRTQKE IESVRSKEED AQEKMVELPK MLQQAAQEAE DAKEAAQAAE EELRKAKEDT EQTKAAATTT SSRLCAVLKE
601: IEASKASERL ALAAVQALKE SKEASDVEDS PRGVTLPLSE YYALSKKAQE AEELANEKVT EALAQVESAK GSELESLDRL TEATKEMDEK KRTLELALER
701: AERANEGKLA AEQQLRKWRS DHEQRRKIQE AAKRAVNTVS SPFVDTYLKE QDSRLHMSGS SYEDHVPNRK LRKKKSFLPR MGSFLSRNTP AQT
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.