Factsheet for Solyc12g088830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078950.1.1
Solyc05g042150.1.1
Solyc07g022910.2.1
Solyc07g026880.1.1
Solyc08g015840.1.1
Solyc12g088830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	Solyc04g078950.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc05g042150.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g022910.2.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g026880.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc08g015840.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc12g088830.1.1	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g042150.1.1	Tomato	cytosol	20.52	90.1
Solyc07g026880.1.1	Tomato	cytosol	15.3	83.77
Solyc08g015840.1.1	Tomato	cytosol	16.96	72.96
PGSC0003DMT400039921	Potato	nucleus	74.02	72.9
Solyc04g078950.1.1	Tomato	nucleus	22.3	61.64
Bra034308.1-P	Field mustard	nucleus	45.31	59.04
Solyc07g022910.2.1	Tomato	plastid	54.57	54.31
CDY48180	Canola	nucleus	47.21	53.93
VIT_18s0001g10560.t01	Wine grape	nucleus	51.84	51.78
CDX77048	Canola	nucleus	45.91	51.12
AT2G26570.1	Thale cress	nucleus	48.75	50.93
Bra041137.1-P	Field mustard	nucleus	32.86	49.38
CDX72400	Canola	nucleus	38.91	48.24
AT4G33390.1	Thale cress	nucleus	44.13	47.75
CDY46119	Canola	nucleus	37.6	46.69
KRH07566	Soybean	nucleus	34.05	46.67
CDX68971	Canola	mitochondrion, nucleus, plastid	44.13	46.15
KRH45361	Soybean	nucleus	31.91	45.9
CDY22380	Canola	nucleus	37.49	43.95
Bra033647.1-P	Field mustard	nucleus	37.25	43.55
TraesCS1D01G248300.1	Wheat	nucleus, plastid	37.01	43.51
KRH51982	Soybean	nucleus	49.11	43.44
CDX71526	Canola	nucleus	36.77	42.82
HORVU2Hr1G030630.1	Barley	nucleus	40.09	42.62
Os03t0395300-01	Rice	plasma membrane	39.15	42.53
KRH61284	Soybean	nucleus	48.4	41.93
TraesCS2A01G166400.1	Wheat	cytosol	39.38	41.87
AT5G42880.1	Thale cress	nucleus	37.25	41.81
KRH15355	Soybean	nucleus	49.82	41.58
GSMUA_Achr6P10120_001	Banana	nucleus	42.94	41.28
TraesCS1B01G259500.1	Wheat	nucleus	37.25	41.1
GSMUA_Achr5P17590_001	Banana	nucleus	39.86	40.98
TraesCS1A01G248800.1	Wheat	nucleus	37.6	40.64
Zm00001d029420_P002	Maize	nucleus	37.72	40.56
AT1G45545.2	Thale cress	nucleus	36.18	40.5
GSMUA_Achr9P27100_001	Banana	nucleus	39.38	40.39
Bra040259.1-P	Field mustard	nucleus	34.99	40.3
Zm00001d022161_P001	Maize	nucleus	38.2	40.25
CDY17108	Canola	nucleus	34.88	40.22
CDY17054	Canola	nucleus	33.81	40.14
EER92167	Sorghum	nucleus	37.25	40.05
Bra014049.1-P	Field mustard	nucleus	35.71	39.92
CDY43212	Canola	nucleus	33.81	39.92
Os07t0619100-01	Rice	plasma membrane	38.67	39.9
TraesCS2B01G192300.1	Wheat	nucleus	39.62	39.71
CDY62582	Canola	nucleus	34.4	39.62
Zm00001d047240_P002	Maize	nucleus	36.65	39.36
TraesCS2D01G173700.1	Wheat	nucleus	39.15	39.24
KXG36701	Sorghum	nucleus	38.32	39.15
GSMUA_Achr10P...	Banana	cytosol	36.89	38.16
GSMUA_Achr5P24580_001	Banana	cytosol	27.05	36.31
Os06t0314000-01	Rice	cytosol, nucleus	21.47	35.77
HORVU1Hr1G062330.8	Barley	nucleus	38.2	35.62
TraesCS4B01G300400.1	Wheat	nucleus	31.2	30.4
Solyc07g065680.2.1	Tomato	nucleus	19.45	24.3
Solyc04g015110.2.1	Tomato	plastid	17.68	23.92

Protein Annotations

EnsemblPlants:Solyc12g088830.1.1	EnsemblPlantsGene:Solyc12g088830.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043
InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2	PFAM:PF05701	SEG:seg
UniParc:UPI0002769462	UniProt:K4DGV4	MapMan:20.5.8.1	:	:	:

Description

No Description!

Coordinates

chr12:-:64049040..64052083

Molecular Weight (calculated)

93508.9 Da

IEP (calculated)

4.973

GRAVY (calculated)

-0.746

Length

843 amino acids

Sequence
(BLAST)

001: MEDVKDLKLH ASESSPGEDR SHSAIQTSQD ADEKPNSENQ QLNVDASEHV EEATKSSSLE KRETHPTGAT MVNQDNSSQP VHSPKPSEPP IDTNGSKEEE
101: HIQSNSSTKS ADDSCSTSHV KETKPVNTTR VESSDNIDKS PTLRIKIPGP TAQSKQPENV DANRVNIDTA APIQSVKQAV SKFGGIVDWK AHRKQTVERR
201: NLIEQELTKV QEEIPLYKKQ CQDAEDAKVL VLKELDSTKR LIEELKLNLE RAQTEEQQAR QDSELATLRV EEMERGIADD SSIAAKAQLE VARARLEAAV
301: SELKSVNSEL DVLRKDYDLL ISEKDVAVEK AEEAVSVSNK VEKTVEDLTI ELITSKDALE AAHAAHLEAE EHRVGVAMAR EQDTLNWENE LKEAEEELER
401: LNQQIMSAKD HKAKLDTASS LLQDLNIELA AYMESKLKQE ADEEGNMKGE KLEMDKRSHH DIQGVVASAK KELEEVKLNI EKATAEVECL KVAAVALKAE
501: LEKEKSELAS IQQREGMAAI AVTSLEAELN RTKSEISLLL IKEKEAREKM VDLPKQLHEA AQEADRAKLL AQTVREELSK AKEEAEQAKA ATSTLESRLL
601: AVKKEIEAAK ASEKLAIAAI SALQESESTE STMDETTGVT LSLEEYYELS KQAFEAEKQA NTRVSAAMSK IEVAKESELS SLNKLEEVNV AMTEKKEALE
701: IALQKAEKAK EGKLAAEQEL RKWRAEHEKR RKSGKSVTPV NKTMSSKMSS EENKESKASE DAVPHQTSNP KENVQTKSET DSSQEVKVTK KKKKSFFPRV
801: LMFLGRKKAQ AKILEGNKFF IGLALSVSLC LLKLLTASNV YSC

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.