Factsheet for GSMUA_Achr5P24580_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr5P17590_001
GSMUA_Achr5P24580_001
GSMUA_Achr6P10120_001
GSMUA_Achr9P27100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	GSMUA_Achr10P...	AT2G26570.1	20974974
AT2G26570.1	GSMUA_Achr5P17590_001	AT2G26570.1	20974974
AT2G26570.1	GSMUA_Achr5P24580_001	AT2G26570.1	20974974
AT2G26570.1	GSMUA_Achr6P10120_001	AT2G26570.1	20974974
AT2G26570.1	GSMUA_Achr9P27100_001	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g042150.1.1	Tomato	cytosol	12.74	41.67
Solyc07g026880.1.1	Tomato	cytosol	9.24	37.66
Bra034308.1-P	Field mustard	nucleus	36.15	35.09
Solyc08g015840.1.1	Tomato	cytosol	10.35	33.16
GSMUA_Achr9P27100_001	Banana	nucleus	40.92	31.27
CDY48180	Canola	nucleus	36.62	31.17
CDX77048	Canola	nucleus	37.42	31.04
KRH07566	Soybean	nucleus	29.3	29.92
AT4G33390.1	Thale cress	nucleus	36.78	29.65
GSMUA_Achr6P10120_001	Banana	nucleus	41.4	29.65
KRH45361	Soybean	nucleus	27.55	29.52
Bra041137.1-P	Field mustard	nucleus	26.11	29.23
CDX72400	Canola	nucleus	31.53	29.12
VIT_18s0001g10560.t01	Wine grape	nucleus	39.01	29.03
AT2G26570.1	Thale cress	nucleus	37.1	28.87
Solyc07g022910.2.1	Tomato	plastid	38.38	28.45
CDY46119	Canola	nucleus	30.57	28.28
CDX68971	Canola	mitochondrion, nucleus, plastid	35.67	27.79
PGSC0003DMT400011385	Potato	nucleus	39.65	27.57
PGSC0003DMT400039921	Potato	nucleus	37.58	27.57
Solyc12g088830.1.1	Tomato	nucleus	36.31	27.05
CDY22380	Canola	nucleus	30.89	26.98
CDX71526	Canola	nucleus	31.05	26.93
Bra033647.1-P	Field mustard	nucleus	30.89	26.91
AT5G42880.1	Thale cress	nucleus	31.53	26.36
GSMUA_Achr5P17590_001	Banana	nucleus	34.24	26.22
GSMUA_Achr10P...	Banana	cytosol	33.6	25.89
AT1G45545.2	Thale cress	nucleus	30.89	25.76
PGSC0003DMT400020677	Potato	nucleus	39.17	25.36
CDY17054	Canola	nucleus	28.5	25.21
Bra014049.1-P	Field mustard	nucleus	30.1	25.07
CDY43212	Canola	nucleus	28.18	24.79
Bra040259.1-P	Field mustard	nucleus	28.82	24.73
KRH51982	Soybean	nucleus	37.42	24.66
CDY62582	Canola	nucleus	28.66	24.59
CDY17108	Canola	nucleus	28.34	24.35
KRH61284	Soybean	nucleus	37.1	23.95
Solyc04g078950.1.1	Tomato	nucleus	11.15	22.95
KRH15355	Soybean	nucleus	36.62	22.77
GSMUA_Achr4P18510_001	Banana	nucleus	17.36	17.78
GSMUA_Achr7P16580_001	Banana	cytosol	16.08	16.4
GSMUA_AchrUn_...	Banana	nucleus	14.81	14.69

Protein Annotations

EnsemblPlants:GSMUA_Achr5P24580_001	EnsemblPlants:GSMUA_Achr5T24580_001	EnsemblPlantsGene:GSMUA_Achr5G24580_001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054
PANTHER:PTHR32054:SF2	PFAM:PF05701	SEG:seg	UniParc:UPI000296D6BB	UniProt:M0T1D3	MapMan:35.1

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr5G24580_001]

Coordinates

chr5:+:25903829..25906130

Molecular Weight (calculated)

70592.5 Da

IEP (calculated)

5.122

GRAVY (calculated)

-0.693

Length

628 amino acids

Sequence
(BLAST)

001: MIKSETQSLV LIDYIHNPQA EVNNGSASKL PESLKKDDVN RAYVDTAAPF ESVKEAISKF GGLIDWEAQT LEEVLKLSSP RSSSRTSKLL ESLKKVNINQ
101: AYIDTAAPFE SVKDAISKFG GTVDWEAQTA VTIERHKHVH LELEKAQEEI MKCKEQYEAV ESIKEDVTKE LSSTKRLVEE LKQSLEKAQP REAQVKQDSE
201: LIDVRLKEIE QRIAKFASVA TNTDGVEIDR ERIADFTAVV AELRLVKQEL ESMESERVVL VDERNTALRK ATDFDVASKE IEKTIEDLNL ELVATKESIE
301: LAHSAHLEAE EQRASAAVAL EQDKLIWQKE LKHAEDEVEQ LKEQLLSTDD VKSMLNRASS LLSRLKDELA LYMKAKPNRE AKSTQEHKLV DHTGDVKESN
401: PLALNPKELD EARSRIEKAN NEINCLRVAS SSLKSELEME RASVSTLRQR NVLASVLVSS LEDELNRTKT ELGKALERAA EEADRAKERE EQAKDEACTM
501: ENEVKDMIQE RKTALRTAEE KAERATEGKL GMEQELRTWR AKQEEQRKAR GAATRLPELS NLDTAVEARS CVGKADAGID ESPLMANPKL QMTRSNTTNS
601: IGASKRGKRS LFRRIAMLFT GKKTQPMG

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.