Factsheet for Solyc07g022910.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078950.1.1
Solyc05g042150.1.1
Solyc07g022910.2.1
Solyc07g026880.1.1
Solyc08g015840.1.1
Solyc12g088830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	Solyc04g078950.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc05g042150.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g022910.2.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g026880.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc08g015840.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc12g088830.1.1	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400011385	Potato	nucleus	76.86	72.09
Solyc05g042150.1.1	Tomato	cytosol	15.82	69.79
Solyc07g026880.1.1	Tomato	cytosol	12.16	66.88
Solyc04g078950.1.1	Tomato	nucleus	22.9	63.61
Bra034308.1-P	Field mustard	nucleus	45.57	59.66
VIT_18s0001g10560.t01	Wine grape	nucleus	55.14	55.33
Solyc12g088830.1.1	Tomato	nucleus	54.31	54.57
CDY48180	Canola	nucleus	46.87	53.79
CDX77048	Canola	nucleus	46.99	52.58
Bra041137.1-P	Field mustard	nucleus	34.24	51.69
AT2G26570.1	Thale cress	nucleus	49.23	51.67
AT4G33390.1	Thale cress	nucleus	46.87	50.96
CDX72400	Canola	nucleus	40.38	50.29
CDY46119	Canola	nucleus	39.43	49.19
KRH07566	Soybean	nucleus	35.54	48.94
Solyc08g015840.1.1	Tomato	cytosol	11.1	47.96
CDX68971	Canola	mitochondrion, nucleus, plastid	45.45	47.77
KRH45361	Soybean	nucleus	31.88	46.08
TraesCS1D01G248300.1	Wheat	nucleus, plastid	38.72	45.75
CDY22380	Canola	nucleus	38.72	45.62
Bra033647.1-P	Field mustard	nucleus	38.72	45.49
Os03t0395300-01	Rice	plasma membrane	41.32	45.1
CDX71526	Canola	nucleus	38.49	45.03
KRH51982	Soybean	nucleus	49.94	44.39
Zm00001d029420_P002	Maize	nucleus	40.61	43.88
GSMUA_Achr6P10120_001	Banana	nucleus	45.34	43.79
HORVU2Hr1G030630.1	Barley	nucleus	40.97	43.76
KRH61284	Soybean	nucleus	49.82	43.37
TraesCS2A01G166400.1	Wheat	cytosol	40.38	43.13
TraesCS1B01G259500.1	Wheat	nucleus	38.61	42.8
TraesCS1A01G248800.1	Wheat	nucleus	39.32	42.69
EER92167	Sorghum	nucleus	39.43	42.6
GSMUA_Achr5P17590_001	Banana	nucleus	41.2	42.56
CDY17108	Canola	nucleus	36.72	42.54
Zm00001d047240_P002	Maize	nucleus	39.32	42.42
CDY62582	Canola	nucleus	36.6	42.35
TraesCS2B01G192300.1	Wheat	nucleus	41.91	42.21
CDY17054	Canola	nucleus	35.18	41.97
AT5G42880.1	Thale cress	nucleus	37.19	41.94
Bra040259.1-P	Field mustard	nucleus	36.25	41.94
KXG36701	Sorghum	nucleus	40.73	41.82
Zm00001d022161_P001	Maize	nucleus	39.43	41.75
GSMUA_Achr10P...	Banana	cytosol	40.14	41.72
CDY43212	Canola	nucleus	35.06	41.6
GSMUA_Achr9P27100_001	Banana	nucleus	40.26	41.48
AT1G45545.2	Thale cress	nucleus	36.84	41.43
KRH15355	Soybean	nucleus	49.35	41.39
TraesCS2D01G173700.1	Wheat	nucleus	40.97	41.26
Bra014049.1-P	Field mustard	nucleus	36.13	40.58
Os07t0619100-01	Rice	plasma membrane	38.61	40.02
Os06t0314000-01	Rice	cytosol, nucleus	23.38	39.13
GSMUA_Achr5P24580_001	Banana	cytosol	28.45	38.38
HORVU1Hr1G062330.8	Barley	nucleus	39.91	37.39
TraesCS4B01G300400.1	Wheat	nucleus	32.47	31.79
Solyc07g065680.2.1	Tomato	nucleus	18.65	23.41
Solyc04g015110.2.1	Tomato	plastid	17.0	23.11

Protein Annotations

Gene3D:1.20.1270.60	MapMan:20.5.8.1	InterPro:AH/BAR_dom_sf	ncoils:Coil	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904
GO:GO:0009987	GO:GO:0016043	InterPro:IPR027267	UniProt:K4CD47	PFAM:PF05701	PANTHER:PTHR32054
PANTHER:PTHR32054:SF2	EnsemblPlantsGene:Solyc07g022910.2	EnsemblPlants:Solyc07g022910.2.1	UniParc:UPI000276ABE4	InterPro:Web	SEG:seg

Description

No Description!

Coordinates

chr7:-:23226837..23229990

Molecular Weight (calculated)

93976.5 Da

IEP (calculated)

5.261

GRAVY (calculated)

-0.745

Length

847 amino acids

Sequence
(BLAST)

001: MNETANSEIQ EPSIKSDGAG NISKTASVQS AVPTVQQEAS PKLVEDLKSL EPPTALSETS SSSILDAMNQ PNNTTDAPTE EHDDSPLLTM NSNPASLKEE
101: NLKESSDHIQ SDSLRGEKNN VSLLQHNNSR SIYVVSADTN SSSSQEQKHK YNIHVEVPNT GQSLTKASCL TVKIPEPSAN SKPPNNSVIN RVKIDTAAPI
201: ESVKQAVSKF GGIVDWKAHR VQTVERRKVV DQELANVQEE IPVYKKQSQA AEEAKMMVVK ELDSTKRLIE ELKLNLERAQ TEEQQAKQDS ELAKLRVEEM
301: EQGIADEASI AAKAQLEVAK ARHETAVSEL KNVDYELKNL HKQYDLLVSE RYDAMQNAEE AVSASKKVEK EVEYLTIELI TTKESLEAAQ TAHLEAEEHR
401: IGAAMAREQD TLNWEKELKQ AEDELEKLNQ QIRSSKDLKA KLDTASALLL DLKAEFASYM ESKLKQETVE GGNFNELSEP EKRTHANIQA AVALATRELE
501: EVKLNIEKAT DDVNCLKVAA TSLKAELKKE KLELASIQQR EGMASIAVAS LEAELNKTKS EIGLVQMKEK EVREKVVELP KKLQDAAQEA DRAKSLAQTA
601: CEELRKAKEE AEQAKAGAST MGSRLIAANK EIEAAKASEK LALEAINALQ ESELARSTNN EDSPSGVTLS LEEYYDLSKL AHEAEEQANK SLAAAITQIE
701: VSKESEVRSL SRLEEVNREM TTQKEALEIA MKKAEKAKEG KLAVEQELRK WRAEHRQRRK AAESLPLINT IRSPRTSFEE SKASKTYERA PEAASLHHRS
801: SPRAYEPASN TEIDTSPEVK IPKKKKRSFF PRLLMLLGRK KSQAKTA

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.