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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:nucleus
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc04g078950.1.1
Solyc05g042150.1.1
Solyc07g022910.2.1
Solyc07g026880.1.1
Solyc08g015840.1.1
Solyc12g088830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G26570.1 Solyc04g078950.1.1 AT2G26570.1 20974974
AT2G26570.1 Solyc05g042150.1.1 AT2G26570.1 20974974
AT2G26570.1 Solyc07g022910.2.1 AT2G26570.1 20974974
AT2G26570.1 Solyc07g026880.1.1 AT2G26570.1 20974974
AT2G26570.1 Solyc08g015840.1.1 AT2G26570.1 20974974
AT2G26570.1 Solyc12g088830.1.1 AT2G26570.1 20974974
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc07g026880.1.1 Tomato cytosol 58.85 73.38
Solyc08g015840.1.1 Tomato cytosol 57.81 56.63
Solyc12g088830.1.1 Tomato nucleus 90.1 20.52
PGSC0003DMT400039921 Potato nucleus 90.1 20.21
Bra034308.1-P Field mustard nucleus 61.98 18.39
CDY48180 Canola nucleus 61.46 15.99
Solyc07g022910.2.1 Tomato plastid 69.79 15.82
CDX77048 Canola nucleus 61.98 15.72
CDX72400 Canola nucleus 54.17 15.29
VIT_18s0001g10560.t01 Wine grape nucleus 66.67 15.17
CDY46119 Canola nucleus 53.12 15.02
AT2G26570.1 Thale cress nucleus 61.98 14.75
AT4G33390.1 Thale cress nucleus 58.85 14.51
Bra041137.1-P Field mustard nucleus 41.15 14.08
KRH51982 Soybean nucleus 67.71 13.64
Bra014049.1-P Field mustard nucleus 53.12 13.53
KRH61284 Soybean nucleus 67.71 13.36
CDX68971 Canola mitochondrion, nucleus, plastid 55.73 13.28
CDY22380 Canola nucleus 49.48 13.21
GSMUA_Achr10P... Banana cytosol 55.73 13.13
CDX71526 Canola nucleus 49.48 13.12
CDY17054 Canola nucleus 47.92 12.96
Bra033647.1-P Field mustard nucleus 48.44 12.9
CDY43212 Canola nucleus 47.92 12.89
AT1G45545.2 Thale cress nucleus 50.52 12.88
HORVU2Hr1G030630.1 Barley nucleus 53.12 12.86
GSMUA_Achr5P24580_001 Banana cytosol 41.67 12.74
TraesCS1D01G248300.1 Wheat nucleus, plastid 47.4 12.69
TraesCS2A01G166400.1 Wheat cytosol 51.56 12.48
GSMUA_Achr5P17590_001 Banana nucleus 53.12 12.44
GSMUA_Achr9P27100_001 Banana nucleus 53.12 12.41
AT5G42880.1 Thale cress nucleus 47.92 12.25
Zm00001d029420_P002 Maize nucleus 49.48 12.12
GSMUA_Achr6P10120_001 Banana nucleus 55.21 12.09
KRH15355 Soybean nucleus 63.54 12.08
CDY17108 Canola nucleus 45.83 12.04
TraesCS2B01G192300.1 Wheat nucleus 52.6 12.01
Zm00001d022161_P001 Maize nucleus 50.0 12.0
KRH45361 Soybean nucleus 36.46 11.95
TraesCS2D01G173700.1 Wheat nucleus 52.08 11.89
EER92167 Sorghum nucleus 48.44 11.86
Zm00001d047240_P002 Maize nucleus 48.44 11.85
Os07t0619100-01 Rice plasma membrane 50.0 11.75
CDY62582 Canola nucleus 44.79 11.75
Bra040259.1-P Field mustard nucleus 44.79 11.75
Os03t0395300-01 Rice plasma membrane 47.4 11.73
KRH07566 Soybean nucleus 36.98 11.54
TraesCS1A01G248800.1 Wheat nucleus 46.88 11.54
KXG36701 Sorghum nucleus 49.48 11.52
TraesCS1B01G259500.1 Wheat nucleus 45.31 11.39
HORVU1Hr1G062330.8 Barley nucleus 47.4 10.07
TraesCS4B01G300400.1 Wheat nucleus 34.38 7.63
Solyc04g015110.2.1 Tomato plastid 23.44 7.22
Solyc07g065680.2.1 Tomato nucleus 22.92 6.52
Os06t0314000-01 Rice cytosol, nucleus 14.06 5.34
Solyc04g078950.1.1 Tomato nucleus 1.04 0.66
Protein Annotations
EnsemblPlants:Solyc05g042150.1.1EnsemblPlantsGene:Solyc05g042150.1InterPro:Webncoils:CoilPANTHER:PTHR32054PANTHER:PTHR32054:SF2
PFAM:PF05701SEG:segUniParc:UPI000276650FUniProt:K4C0J6MapMan:35.1:
Description
No Description!
Coordinates
chr5:-:55076333..55077307
Molecular Weight (calculated)
21876.0 Da
IEP (calculated)
4.581
GRAVY (calculated)
-0.539
Length
192 amino acids
Sequence
(BLAST)
001: MFGGIVDWKA HRQQTVERRN LIEQELTKVQ EEIPLYKKQC QDAEDAKVLV LKELDSTKRL IEKLKLNLER AQTEEQQARQ DSELSTLRVE EMERGITDDS
101: SIAAKAQLEA VVSELKYVNS ELDVLRKDYD LLVSEKDVAV EKAEEAVSES NKVEKTVEDL TIELITSKDA LEATHAAHLV KKSILQNIYP LA
Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.