Factsheet for Solyc08g015840.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078950.1.1
Solyc05g042150.1.1
Solyc07g022910.2.1
Solyc07g026880.1.1
Solyc08g015840.1.1
Solyc12g088830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	Solyc04g078950.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc05g042150.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g022910.2.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g026880.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc08g015840.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc12g088830.1.1	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g042150.1.1	Tomato	cytosol	56.63	57.81
Solyc07g026880.1.1	Tomato	cytosol	32.14	40.91
Solyc12g088830.1.1	Tomato	nucleus	72.96	16.96
PGSC0003DMT400039921	Potato	nucleus	64.29	14.72
Bra034308.1-P	Field mustard	nucleus	42.86	12.98
CDY48180	Canola	nucleus	43.37	11.52
CDY46119	Canola	nucleus	39.29	11.34
CDX72400	Canola	nucleus	39.29	11.32
Solyc07g022910.2.1	Tomato	plastid	47.96	11.1
CDX77048	Canola	nucleus	42.35	10.96
AT2G26570.1	Thale cress	nucleus	44.9	10.9
AT4G33390.1	Thale cress	nucleus	42.35	10.65
VIT_18s0001g10560.t01	Wine grape	nucleus	44.9	10.43
GSMUA_Achr5P24580_001	Banana	cytosol	33.16	10.35
CDX68971	Canola	mitochondrion, nucleus, plastid	41.84	10.17
AT1G45545.2	Thale cress	nucleus	37.24	9.69
HORVU2Hr1G030630.1	Barley	nucleus	38.78	9.58
GSMUA_Achr9P27100_001	Banana	nucleus	39.8	9.49
TraesCS1D01G248300.1	Wheat	nucleus, plastid	34.69	9.48
KRH51982	Soybean	nucleus	45.92	9.44
Bra014049.1-P	Field mustard	nucleus	35.71	9.28
KRH61284	Soybean	nucleus	45.92	9.25
Zm00001d022161_P001	Maize	nucleus	37.24	9.12
GSMUA_Achr10P...	Banana	cytosol	37.76	9.08
TraesCS2A01G166400.1	Wheat	cytosol	36.73	9.08
Os07t0619100-01	Rice	plasma membrane	37.76	9.06
CDY22380	Canola	nucleus	33.16	9.04
CDX71526	Canola	nucleus	33.16	8.98
CDY43212	Canola	nucleus	32.65	8.96
Zm00001d029420_P002	Maize	nucleus	35.71	8.93
Zm00001d047240_P002	Maize	nucleus	35.71	8.92
GSMUA_Achr5P17590_001	Banana	nucleus	37.24	8.9
Os03t0395300-01	Rice	plasma membrane	35.2	8.89
Bra033647.1-P	Field mustard	nucleus	32.65	8.88
CDY17054	Canola	nucleus	32.14	8.87
EER92167	Sorghum	nucleus	35.2	8.8
TraesCS2B01G192300.1	Wheat	nucleus	37.76	8.8
TraesCS2D01G173700.1	Wheat	nucleus	37.24	8.68
TraesCS1B01G259500.1	Wheat	nucleus	33.67	8.64
KXG36701	Sorghum	nucleus	36.22	8.61
KRH15355	Soybean	nucleus	43.88	8.51
TraesCS1A01G248800.1	Wheat	nucleus	33.67	8.46
AT5G42880.1	Thale cress	nucleus	32.14	8.39
KRH07566	Soybean	nucleus	26.02	8.29
CDY17108	Canola	nucleus	30.61	8.21
KRH45361	Soybean	nucleus	23.98	8.02
CDY62582	Canola	nucleus	29.59	7.92
Bra040259.1-P	Field mustard	nucleus	29.59	7.92
GSMUA_Achr6P10120_001	Banana	nucleus	34.69	7.75
HORVU1Hr1G062330.8	Barley	nucleus	34.18	7.41
Solyc04g015110.2.1	Tomato	plastid	22.96	7.22
Bra041137.1-P	Field mustard	nucleus	19.9	6.95
TraesCS4B01G300400.1	Wheat	nucleus	27.04	6.13
Solyc07g065680.2.1	Tomato	nucleus	19.39	5.63
Os06t0314000-01	Rice	cytosol, nucleus	11.73	4.55
Solyc04g078950.1.1	Tomato	nucleus	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc08g015840.1.1	EnsemblPlantsGene:Solyc08g015840.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043
InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2	PFAM:PF05701	SEG:seg
UniParc:UPI000276B4B6	UniProt:K4CJB2	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr8:+:6004186..6006048

Molecular Weight (calculated)

22201.8 Da

IEP (calculated)

7.129

GRAVY (calculated)

-0.322

Length

196 amino acids

Sequence
(BLAST)

001: MKWKIPGPIA QSKQLENVDA NRVNIDTTAP IQYVKQAVSK FGGIVDWKAH RQQTVERRNL IEQELTKVQE EIPLYKKQCQ DVEDAKVLVL KLALLKSVNS
101: ELDVLRKDYD LLVTEKDVAV EKEEEVVSVS NKVEKTVEDL TIEPITSKDA LEASHVAHLV KKSILQNILS PLHDLCHIKR TSLHSITASI CNKSYL

Best Arabidopsis Sequence Match ( AT4G33390.1 )
(BLAST)

001: MEDLKTTDAL SLPVVSDNGG IIEPELQLPQ AIPTELENNE EENGTIQQSQ SEEDSAENGK IYMDDTFLPS KSQVKETQDS PTTPSFVSPS AEIVLPRVNT
101: KYEAEGTTRN AVSPRPLYSP RSIGSPRALL SPRFAGSSSP LSNGTPISMD SFRDSIDTAS PFESVKEAVS KFGGITDWKA HRMKVLERRN FVEQELDKIQ
201: EEIPEYKKKS EMVEMSKMLA VEELESTKRL IEELKLNLEK AETEEQQAKQ DSELAKLRVQ EMEQGIADEA SVASKAQLEV AQARHTSAIS ELESVKEELQ
301: TLQNEYDALV KEKDLAVKEA EEAVIASKEV ERKVEELTIE LIATKESLEC AHSSHLEAEE HRIGAAMLRD QETHRWEKEL KQAEEELQRL KQHLVSTKEL
401: QVKLEFASAL LLDLKKELAD HKESSKVKEE TSETVVTNIE ISLQEKTTDI QKAVASAKKE LEEVNANVEK ATSEVNCLKV ASSSLRLEID KEKSALDSLK
501: QREGMASVTV ASLEAEIDIT RCEIALVKSK EKETREEMVE LPKQLQQASQ EADEAKSFAE LAREELRKSQ EEAEQAKAGA STMESRLFAA QKEIEAIKAS
601: ERLALAAIKA LQESESSSKE NAVDSPRTVT LTIEEYYELS KRAHEAEEAA NARVAAAVSE VGEAKETEKR SLEKLEEVNK EMVERKATLA GAMEKAEKAK
701: EGKLGVEQEL RKWREVSEKK RKNGSSHGKS IQGSKEKEAE TSVSNETETN PIPQVNPVKK KKKLFPRFFM FLMKKKSHK

Arabidopsis Description

WEL1Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.