Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17108 | Canola | nucleus | 68.39 | 70.45 |
| CDY17054 | Canola | nucleus | 65.34 | 69.3 |
| Bra040259.1-P | Field mustard | nucleus | 67.2 | 69.13 |
| CDY43212 | Canola | nucleus | 64.94 | 68.49 |
| Bra014049.1-P | Field mustard | nucleus | 68.53 | 68.44 |
| CDY62582 | Canola | nucleus | 61.35 | 63.11 |
| AT5G42880.1 | Thale cress | nucleus | 52.72 | 52.86 |
| Solyc05g042150.1.1 | Tomato | cytosol | 12.88 | 50.52 |
| Solyc07g026880.1.1 | Tomato | cytosol | 9.83 | 48.05 |
| AT2G26570.1 | Thale cress | nucleus | 44.22 | 41.26 |
| AT4G33390.1 | Thale cress | nucleus | 42.36 | 40.95 |
| Solyc04g078950.1.1 | Tomato | nucleus | 15.54 | 38.36 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 42.63 | 38.03 |
| Solyc08g015840.1.1 | Tomato | cytosol | 9.69 | 37.24 |
| Solyc07g022910.2.1 | Tomato | plastid | 41.43 | 36.84 |
| KRH07566 | Soybean | nucleus | 29.61 | 36.26 |
| Solyc12g088830.1.1 | Tomato | nucleus | 40.5 | 36.18 |
| PGSC0003DMT400039921 | Potato | nucleus | 40.77 | 35.86 |
| PGSC0003DMT400011385 | Potato | nucleus | 42.36 | 35.33 |
| TraesCS1D01G248300.1 | Wheat | nucleus, plastid | 33.2 | 34.87 |
| KRH45361 | Soybean | nucleus | 26.83 | 34.47 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 39.71 | 34.09 |
| Os03t0395300-01 | Rice | plasma membrane | 34.93 | 33.89 |
| TraesCS1B01G259500.1 | Wheat | nucleus | 33.6 | 33.12 |
| TraesCS2A01G166400.1 | Wheat | cytosol | 34.66 | 32.91 |
| GSMUA_Achr10P... | Banana | cytosol | 35.59 | 32.88 |
| KRH51982 | Soybean | nucleus | 41.43 | 32.74 |
| GSMUA_Achr9P27100_001 | Banana | nucleus | 35.72 | 32.73 |
| TraesCS1A01G248800.1 | Wheat | nucleus | 33.86 | 32.69 |
| HORVU2Hr1G030630.1 | Barley | nucleus | 34.4 | 32.66 |
| Zm00001d029420_P002 | Maize | nucleus | 33.47 | 32.14 |
| Zm00001d022161_P001 | Maize | nucleus | 34.13 | 32.12 |
| PGSC0003DMT400020677 | Potato | nucleus | 41.17 | 31.96 |
| Os07t0619100-01 | Rice | plasma membrane | 34.66 | 31.95 |
| KXG36701 | Sorghum | nucleus | 34.93 | 31.88 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 34.66 | 31.83 |
| EER92167 | Sorghum | nucleus | 33.07 | 31.76 |
| TraesCS2D01G173700.1 | Wheat | nucleus | 35.46 | 31.75 |
| KRH61284 | Soybean | nucleus | 40.9 | 31.65 |
| TraesCS2B01G192300.1 | Wheat | nucleus | 35.06 | 31.39 |
| Zm00001d047240_P002 | Maize | nucleus | 32.67 | 31.34 |
| GSMUA_Achr5P24580_001 | Banana | cytosol | 25.76 | 30.89 |
| KRH15355 | Soybean | nucleus | 41.04 | 30.59 |
| HORVU1Hr1G062330.8 | Barley | nucleus | 34.79 | 28.98 |
| Os06t0314000-01 | Rice | cytosol, nucleus | 17.4 | 25.89 |
| TraesCS4B01G300400.1 | Wheat | nucleus | 29.35 | 25.55 |
| AT5G55860.1 | Thale cress | nucleus | 17.93 | 20.8 |
| AT4G17210.1 | Thale cress | cytosol, plastid | 14.21 | 20.3 |
| AT1G12150.2 | Thale cress | cytosol | 14.34 | 19.71 |
Protein Annotations
| ArrayExpress:AT1G45545 | EnsemblPlants:AT1G45545.2 | EnsemblPlantsGene:AT1G45545 | EntrezGene:841100 | InterPro:Web | ncoils:Coil |
| PANTHER:PTHR32054 | PANTHER:PTHR32054:SF2 | PFAM:PF05701 | ProteinID:ANM60227.1 | RefSeq:AT1G45545 | RefSeq:AT1G45545-TAIR-G |
| RefSeq:NP_001322527.1 | SEG:seg | TAIR:AT1G45545 | Unigene:At.52042 | UniParc:UPI000848A0F7 | UniProt:A0A1P8AUD2 |
| MapMan:35.1 | : | : | : | : | : |
Description
Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT1G45545]
Coordinates
chr1:-:17180615..17183237
Molecular Weight (calculated)
84589.4 Da
IEP (calculated)
4.831
GRAVY (calculated)
-0.762
Length
753 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDDDHKVSN DISLLPDLNF DSSSPFTSIE FDSSICDLLN LETGGDTPNL IPDHNPFFDS FDGLQEEEED SHFVVEPESP KVYIAPRVMI NHQDSFSLDS
101: RNDEYIEDVK ILPGSPGGIQ DLGLSRLKVP GSPRAFVHPR SSGSPRFVSP TSPVLIDTAA PFESVKEAVS KFGGITDWKA HKIQTIERRK TVDQELEKIQ
201: EDMPDYKKQA VVAEEAKHQV VMELERTRNV VEELKLELEK AEKEEQQAKQ DSDLAKLRVE EMEQGIAGEV SVAAKSQLEV AKARHLSAVS ELGTIREEIE
301: MVSNEYESLL TEKDLAAKKA EDSVLKAKDV EKQMEGLTME VIATKQLLEL AHATHLEAQE KKLDAAMARD QDVYNQEKEL KMVEDEIKRF RQDIDAADDV
401: KTKLKTASAL QQDLRAEIAA YKDSNMGKRN NSDIQAAVDS ARKELEEVIS NIEKANSEVK TLKIIVGSLQ SELAREKHDL SETRQRNRED TREEKCTEIA
501: KKLQEASREA EEAKSLAIAA REELRKAKEE SDEAKTGLSA VERQLMESKK EMEASRASEK LALAAIKALQ ETEYANKIED ISSSPKSIII SVEEYYELSK
601: QAHEVEEAAN RKLAEIVSKI EVAKEEESRI LENLEEVSRE TAIRKVELKE AMTKVEKARD GKVGMDHELR KWRSDNGNRS PEGGNKENLS KSKSALHQPT
701: TFTFGEQASS SNVTPQASSS NVTPETETKK KKKRFSLLPK VFMFLSRKKS SNK
101: RNDEYIEDVK ILPGSPGGIQ DLGLSRLKVP GSPRAFVHPR SSGSPRFVSP TSPVLIDTAA PFESVKEAVS KFGGITDWKA HKIQTIERRK TVDQELEKIQ
201: EDMPDYKKQA VVAEEAKHQV VMELERTRNV VEELKLELEK AEKEEQQAKQ DSDLAKLRVE EMEQGIAGEV SVAAKSQLEV AKARHLSAVS ELGTIREEIE
301: MVSNEYESLL TEKDLAAKKA EDSVLKAKDV EKQMEGLTME VIATKQLLEL AHATHLEAQE KKLDAAMARD QDVYNQEKEL KMVEDEIKRF RQDIDAADDV
401: KTKLKTASAL QQDLRAEIAA YKDSNMGKRN NSDIQAAVDS ARKELEEVIS NIEKANSEVK TLKIIVGSLQ SELAREKHDL SETRQRNRED TREEKCTEIA
501: KKLQEASREA EEAKSLAIAA REELRKAKEE SDEAKTGLSA VERQLMESKK EMEASRASEK LALAAIKALQ ETEYANKIED ISSSPKSIII SVEEYYELSK
601: QAHEVEEAAN RKLAEIVSKI EVAKEEESRI LENLEEVSRE TAIRKVELKE AMTKVEKARD GKVGMDHELR KWRSDNGNRS PEGGNKENLS KSKSALHQPT
701: TFTFGEQASS SNVTPQASSS NVTPETETKK KKKRFSLLPK VFMFLSRKKS SNK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.