Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31245 | Canola | cytosol | 81.39 | 81.39 |
| CDY21038 | Canola | cytosol | 81.2 | 81.35 |
| Bra016786.1-P | Field mustard | cytosol | 81.2 | 81.35 |
| CDY15972 | Canola | cytosol | 81.39 | 49.72 |
| Bra026987.1-P | Field mustard | cytosol | 82.3 | 44.7 |
| CDY26542 | Canola | cytosol | 79.38 | 43.11 |
| KRH36620 | Soybean | cytosol, mitochondrion, nucleus | 44.89 | 42.63 |
| KRH51206 | Soybean | cytosol | 41.24 | 41.09 |
| KRH11615 | Soybean | cytosol, mitochondrion, nucleus | 43.07 | 40.97 |
| KRH01945 | Soybean | cytosol, mitochondrion, nucleus | 41.97 | 40.07 |
| AT4G17210.1 | Thale cress | cytosol, plastid | 34.67 | 36.05 |
| GSMUA_Achr7P16580_001 | Banana | cytosol | 40.33 | 35.88 |
| GSMUA_Achr4P18510_001 | Banana | nucleus | 39.05 | 34.91 |
| Os12t0271600-01 | Rice | plasma membrane | 40.88 | 34.62 |
| OQU79020 | Sorghum | nucleus | 39.78 | 33.49 |
| TraesCS4B01G127500.1 | Wheat | nucleus | 38.69 | 33.44 |
| TraesCS4A01G188200.1 | Wheat | nucleus | 38.69 | 33.33 |
| TraesCS4D01G125200.1 | Wheat | nucleus | 38.5 | 33.28 |
| Zm00001d023629_P001 | Maize | nucleus | 38.87 | 32.67 |
| Zm00001d041088_P004 | Maize | nucleus | 37.96 | 32.05 |
| TraesCS5A01G098800.2 | Wheat | cytosol | 37.04 | 31.77 |
| TraesCS5B01G103500.1 | Wheat | nucleus | 36.86 | 31.61 |
| TraesCS5D01G110400.2 | Wheat | cytosol | 36.86 | 31.61 |
| AT5G55860.1 | Thale cress | nucleus | 36.68 | 30.97 |
| HORVU5Hr1G029890.1 | Barley | nucleus | 36.13 | 30.7 |
| Solyc04g015110.2.1 | Tomato | plastid | 34.67 | 30.5 |
| PGSC0003DMT400050839 | Potato | nucleus | 34.49 | 30.43 |
| PGSC0003DMT400034621 | Potato | mitochondrion, plastid | 24.27 | 29.49 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.21 | 28.75 |
| AT5G42880.1 | Thale cress | nucleus | 22.99 | 16.78 |
| AT4G33390.1 | Thale cress | nucleus | 22.99 | 16.17 |
| AT2G26570.1 | Thale cress | nucleus | 23.72 | 16.11 |
| AT1G45545.2 | Thale cress | nucleus | 19.71 | 14.34 |
Protein Annotations
| MapMan:35.1 | EntrezGene:837767 | ProteinID:AAG12578.1 | ProteinID:AEE28843.1 | ProteinID:ANM59073.1 | ArrayExpress:AT1G12150 |
| EnsemblPlantsGene:AT1G12150 | RefSeq:AT1G12150 | TAIR:AT1G12150 | RefSeq:AT1G12150-TAIR-G | EnsemblPlants:AT1G12150.2 | Unigene:At.42090 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005829 | GO:GO:0008150 | GO:GO:0009903 | GO:GO:0009904 | GO:GO:0009987 | GO:GO:0016043 |
| RefSeq:NP_001321466.1 | RefSeq:NP_172679.1 | PFAM:PF05701 | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF20 | UniProt:Q9FWW5 |
| UniParc:UPI000009EC47 | InterPro:Web | SEG:seg | : | : | : |
Description
WEB family protein At1g12150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWW5]
Coordinates
chr1:-:4123530..4125455
Molecular Weight (calculated)
62653.3 Da
IEP (calculated)
5.114
GRAVY (calculated)
-0.886
Length
548 amino acids
Sequence
(BLAST)
(BLAST)
001: MVNIRVQKAP ESPRTMEVGE IDTRAPFQSV KAAVSLFGEV AVSKQRSTPR RSRLSSESVC DKETQLMLVH KEFMKIKQKL DNAESTRSRA LDDLSKAKKT
101: MEDLSNKLET VNKSKQSAID TKETVQQREE QLEHDKCHGS PPHHHELDVA REQYISTTVE LDAAKQQLNK IRQSFDSAMD FKATALNQAA EAQRALQVNS
201: AKVNELSKEI SDMKDAIHQL KLAAAQNLQE HANIVKEKDD LRECYRTAVE EAEKKLLVLR KEYEPELSRT LEAKLLETTS EIEVLREEMK KAHESEMNTV
301: KIITNELNEA TMRLQEAADD ECSLRSLVNS LRMELEDLRR EREELQQKEA ERLEIEETKK LEALKQESLK LEQMKTEAIE ARNEAANMNR KIESLKKETE
401: AAMIAAEEAE KRLELVIREV EEAKSAEEKV REEMKMISQK QESKKQDEES SGSKIKITIQ EFESLKRGAG ETEAAIEKKL ATIAAELEEI NKRRAEADNK
501: LEANLKAIEE MKQATELAQK SAESAEAAKR MVESELQRWR QQENVQLA
101: MEDLSNKLET VNKSKQSAID TKETVQQREE QLEHDKCHGS PPHHHELDVA REQYISTTVE LDAAKQQLNK IRQSFDSAMD FKATALNQAA EAQRALQVNS
201: AKVNELSKEI SDMKDAIHQL KLAAAQNLQE HANIVKEKDD LRECYRTAVE EAEKKLLVLR KEYEPELSRT LEAKLLETTS EIEVLREEMK KAHESEMNTV
301: KIITNELNEA TMRLQEAADD ECSLRSLVNS LRMELEDLRR EREELQQKEA ERLEIEETKK LEALKQESLK LEQMKTEAIE ARNEAANMNR KIESLKKETE
401: AAMIAAEEAE KRLELVIREV EEAKSAEEKV REEMKMISQK QESKKQDEES SGSKIKITIQ EFESLKRGAG ETEAAIEKKL ATIAAELEEI NKRRAEADNK
501: LEANLKAIEE MKQATELAQK SAESAEAAKR MVESELQRWR QQENVQLA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.