CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G12150.2	Thale cress	cytosol	49.72	81.39
CDY21038	Canola	cytosol	49.05	80.44
CDY31245	Canola	cytosol	48.83	79.93
CDY26542	Canola	cytosol	59.53	52.92
KRH36620	Soybean	cytosol, mitochondrion, nucleus	26.87	41.77
KRH11615	Soybean	cytosol, mitochondrion, nucleus	25.98	40.45
KRH51206	Soybean	cytosol	24.3	39.64
KRH01945	Soybean	cytosol, mitochondrion, nucleus	25.08	39.2
CDY11974	Canola	cytosol, nucleus, plastid	12.04	37.24
CDY58167	Canola	cytosol	20.96	36.15
CDY50127	Canola	cytosol	20.62	35.37
GSMUA_Achr7P16580_001	Banana	cytosol	24.19	35.23
CDY42964	Canola	cytosol	20.29	35.0
CDY09639	Canola	cytosol	20.62	34.84
GSMUA_Achr4P18510_001	Banana	nucleus	23.75	34.75
CDY35594	Canola	nucleus	20.18	34.61
CDX90485	Canola	cytosol	20.29	34.34
Os12t0271600-01	Rice	plasma membrane	24.08	33.38
OQU79020	Sorghum	nucleus	23.75	32.72
Zm00001d023629_P001	Maize	nucleus	23.52	32.36
TraesCS4A01G188200.1	Wheat	nucleus	22.63	31.92
CDY11973	Canola	nucleus	22.74	31.73
TraesCS4B01G127500.1	Wheat	nucleus	22.41	31.7
TraesCS4D01G125200.1	Wheat	nucleus	22.41	31.7
CDY36768	Canola	nucleus	22.74	31.63
CDY17364	Canola	nucleus	22.97	31.55
TraesCS5A01G098800.2	Wheat	cytosol	22.41	31.46
Zm00001d041088_P004	Maize	nucleus	22.74	31.43
TraesCS5B01G103500.1	Wheat	nucleus	22.19	31.14
CDY28631	Canola	nucleus	22.52	30.98
HORVU5Hr1G029890.1	Barley	nucleus	22.07	30.7
TraesCS5D01G110400.2	Wheat	cytosol	21.85	30.67
PGSC0003DMT400034621	Potato	mitochondrion, plastid	14.94	29.71
PGSC0003DMT400050839	Potato	nucleus	20.29	29.31
Solyc04g015110.2.1	Tomato	plastid	20.07	28.89
GSMUA_AchrUn_...	Banana	nucleus	20.07	28.44
CDX72400	Canola	nucleus	13.82	18.24
CDY46119	Canola	nucleus	13.71	18.11
CDY62582	Canola	nucleus	14.72	18.03
CDX68971	Canola	mitochondrion, nucleus, plastid	16.05	17.87
CDX71526	Canola	nucleus	14.38	17.82
CDY22380	Canola	nucleus	14.16	17.66
CDY17108	Canola	nucleus	14.38	17.65
CDY43212	Canola	nucleus	13.94	17.51
CDX77048	Canola	nucleus	14.72	17.44
CDY48180	Canola	nucleus	14.27	17.34
CDY17054	Canola	nucleus	13.71	17.32
CDY35593	Canola	cytosol	3.57	9.5

Protein Annotations

Gene3D:1.20.1280.50	Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078FSZ0	EnsemblPlants:CDY15972	ProteinID:CDY15972
ProteinID:CDY15972.1	ncoils:Coil	InterPro:F-box-assoc_dom_typ1	InterPro:F-box-assoc_interact_dom	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00090356001	InterPro:IPR001810	InterPro:IPR011990
PFAM:PF00646	PFAM:PF05701	PFAM:PF07734	PFscan:PS50181	PANTHER:PTHR32054	PANTHER:PTHR32054:SF20
SMART:SM00256	SUPFAM:SSF81383	TIGRFAMs:TIGR01640	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE94FA	InterPro:Web
SEG:seg	:	:	:	:	:

Description

BnaC08g41510DBnaC08g41510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FSZ0]

Coordinates

chrLK032060:-:55610..61826

Molecular Weight (calculated)

101602.0 Da

IEP (calculated)

4.961

GRAVY (calculated)

-0.537

Length

897 amino acids

Sequence
(BLAST)

001: MKLPCEFVEE ILFRVPPLSL LRCKTVCKQW NTLLNHMSLV RPQLLIWTGP KIYSVGVNLK DDPKIDIREL PNNNIPIPSN FLPCDGLLFC VPRWGNINRA
101: MIVVDPKRVT RSLDIDDSSD IPILSAYRRE RFSVLKQFSE TNKIEIWVTE NKISGDGANV VWMEFMTVSI PFDKDFCPSY FIDNNTYGKS LVMCCKDEDQ
201: NACIYVVKGN ASTKIPIGFD VYEIMANIRV QKGPESPRTE VGEIDTRAPF QSVKAAVSLF GEVVSRQRST TRRSRLSSES VCDKETQLML AHKQFLKIKQ
301: KLDNAEITRS RALSDLSNAK KTMEELTNKL EAVNKSKQSA IDTKETVQQR EDQLEHDKSH GSPPHHHELD VAREQYLSTT IELDAAKQQL NKIKQSFDSA
401: MDLKATALNQ AAEAKRALQV NSAKVNELSK EIGDMKDAIH QLKLAATQNL EEYANIVKEK DDLRECYKTA VEEAEKKLLV LRKEYQPELS RNIEAKLIET
501: TSEIEVLREE MKKAHESEMN TVKIITNELN EATMKLQEAA DEEGSLRSLV NSLRMELEDM RREREELQQR EAERLEVEER KKVEALKEES LRLEEMKQEA
601: LVARNEAEEM NRKIESLKKE TDSAMIAAEE AEKRLELVIR EVEEAKAAEE KVREEMKMIS QKQESKKQDE ESSGSKIKIT VQEFESLKRG AGETEKAVEK
701: KLGDIAGELE EINKRKAEGD NKLGASLKAI EEMKHATDLA QKAADSAEAA KSVVENLTRT NLSCDDVEDT EMEASYYFEI GSFPFISDSG LTSDRNLSYK
801: EKLRSGIVGI KKDDAVTLFQ TMTGSRPLPT LVDFSKLFIL SSIASAGVVN LGRVFEAMEL VDRMVQSQHV PDLITLNTIV NGLCLPERVS EAVDLID

Best Arabidopsis Sequence Match ( AT1G12150.2 )
(BLAST)

001: MVNIRVQKAP ESPRTMEVGE IDTRAPFQSV KAAVSLFGEV AVSKQRSTPR RSRLSSESVC DKETQLMLVH KEFMKIKQKL DNAESTRSRA LDDLSKAKKT
101: MEDLSNKLET VNKSKQSAID TKETVQQREE QLEHDKCHGS PPHHHELDVA REQYISTTVE LDAAKQQLNK IRQSFDSAMD FKATALNQAA EAQRALQVNS
201: AKVNELSKEI SDMKDAIHQL KLAAAQNLQE HANIVKEKDD LRECYRTAVE EAEKKLLVLR KEYEPELSRT LEAKLLETTS EIEVLREEMK KAHESEMNTV
301: KIITNELNEA TMRLQEAADD ECSLRSLVNS LRMELEDLRR EREELQQKEA ERLEIEETKK LEALKQESLK LEQMKTEAIE ARNEAANMNR KIESLKKETE
401: AAMIAAEEAE KRLELVIREV EEAKSAEEKV REEMKMISQK QESKKQDEES SGSKIKITIQ EFESLKRGAG ETEAAIEKKL ATIAAELEEI NKRRAEADNK
501: LEANLKAIEE MKQATELAQK SAESAEAAKR MVESELQRWR QQENVQLA

Arabidopsis Description

WEB family protein At1g12150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.