Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09639 | Canola | cytosol | 95.47 | 95.29 |
| CDY42964 | Canola | cytosol | 79.81 | 81.35 |
| AT4G17210.1 | Thale cress | cytosol, plastid | 76.42 | 76.85 |
| CDY58167 | Canola | cytosol | 74.15 | 75.58 |
| CDY50127 | Canola | cytosol | 74.53 | 75.53 |
| CDY35594 | Canola | nucleus | 74.53 | 75.53 |
| CDY21038 | Canola | cytosol | 35.85 | 34.73 |
| CDY31245 | Canola | cytosol | 34.53 | 33.39 |
| KRH51206 | Soybean | cytosol | 32.45 | 31.27 |
| KRH36620 | Soybean | cytosol, mitochondrion, nucleus | 33.58 | 30.85 |
| KRH01945 | Soybean | cytosol, mitochondrion, nucleus | 33.02 | 30.49 |
| KRH11615 | Soybean | cytosol, mitochondrion, nucleus | 32.26 | 29.69 |
| CDY11974 | Canola | cytosol, nucleus, plastid | 14.53 | 26.55 |
| TraesCS4B01G127500.1 | Wheat | nucleus | 30.94 | 25.87 |
| TraesCS4D01G125200.1 | Wheat | nucleus | 30.94 | 25.87 |
| TraesCS4A01G188200.1 | Wheat | nucleus | 30.94 | 25.79 |
| OQU79020 | Sorghum | nucleus | 31.51 | 25.65 |
| Os12t0271600-01 | Rice | plasma membrane | 31.13 | 25.5 |
| PGSC0003DMT400034621 | Potato | mitochondrion, plastid | 21.7 | 25.5 |
| GSMUA_Achr7P16580_001 | Banana | cytosol | 29.62 | 25.49 |
| GSMUA_Achr4P18510_001 | Banana | nucleus | 29.43 | 25.45 |
| Zm00001d023629_P001 | Maize | nucleus | 30.94 | 25.15 |
| Zm00001d041088_P004 | Maize | nucleus | 30.57 | 24.96 |
| HORVU5Hr1G029890.1 | Barley | nucleus | 30.19 | 24.81 |
| TraesCS5A01G098800.2 | Wheat | cytosol | 29.81 | 24.73 |
| TraesCS5D01G110400.2 | Wheat | cytosol | 29.81 | 24.73 |
| Solyc04g015110.2.1 | Tomato | plastid | 28.87 | 24.56 |
| PGSC0003DMT400050839 | Potato | nucleus | 28.68 | 24.48 |
| TraesCS5B01G103500.1 | Wheat | nucleus | 29.25 | 24.26 |
| CDY17364 | Canola | nucleus | 27.92 | 22.66 |
| CDY36768 | Canola | nucleus | 27.36 | 22.48 |
| CDY28631 | Canola | nucleus | 27.36 | 22.24 |
| CDY11973 | Canola | nucleus | 26.23 | 21.62 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.47 | 21.33 |
| CDY15972 | Canola | cytosol | 34.34 | 20.29 |
| CDY26542 | Canola | cytosol | 33.4 | 17.54 |
| CDY22380 | Canola | nucleus | 21.89 | 16.13 |
| CDX71526 | Canola | nucleus | 21.51 | 15.75 |
| CDY48180 | Canola | nucleus | 21.7 | 15.58 |
| CDY46119 | Canola | nucleus | 19.25 | 15.02 |
| CDX72400 | Canola | nucleus | 19.06 | 14.85 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 22.45 | 14.76 |
| CDY43212 | Canola | nucleus | 19.81 | 14.71 |
| CDX77048 | Canola | nucleus | 20.94 | 14.66 |
| CDY17054 | Canola | nucleus | 19.43 | 14.51 |
| CDY17108 | Canola | nucleus | 18.49 | 13.41 |
| CDY62582 | Canola | nucleus | 18.49 | 13.39 |
| CDY35593 | Canola | cytosol | 7.36 | 11.57 |
Protein Annotations
| EnsemblPlants:CDX90485 | EnsemblPlantsGene:GSBRNA2T00151102001 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF3 |
| PFAM:PF05701 | ProteinID:CDX90485 | ProteinID:CDX90485.1 | SEG:seg | UniParc:UPI0004EDE6BD | MapMan:35.1 |
Description
BnaA03g42960D
Coordinates
chrLK031863:+:469069..470913
Molecular Weight (calculated)
61238.3 Da
IEP (calculated)
4.701
GRAVY (calculated)
-0.990
Length
530 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKMRADAPV MPPETLPRSS EVGEIDTRAP FQSVRDAVSL FRQVSFPKQQ QQQQQQRLSS STSSSQDAPD VSAEKETQLL LAEQEMERVQ LCLDTSVKAK
101: AKALSDLDSA QRKAADLRAK LEATKQSRKS AIMTKHTMTQ RLEQLQSENQ ETESVREDYI LATAELFMAK RELKEIKQEF SISVEERLAE LQKAEEAECS
201: SMVNSRKIKD MTEEIAEMRD TVLRLNTDAD KKKEEEEKIN EERMAAREAY AARKREAEQR LEDLRRDCDP ELRKEIDELA EISAGNERLQ EEIKLARELK
301: EAKSEMQEIC DEERSYKSLV GSLTVELDGV QRENRDLKEN EKERREVEEG EWVEASRKVE KIMREAEETR QEAEEMRMHV DELRREAAAT HMSMGEAVKQ
401: LEIVGKAVKK AKTAEKRAVE DMRVLTDKKE SLTQDEPDKK IRISMKEYEE LRGRHEESER MVQYKAKTVA AQLEEINASR VEGERMLEEK LKEMEEVNDA
501: IDAALRNAEI AEEAHCIVDA ELRKWKPQEL
101: AKALSDLDSA QRKAADLRAK LEATKQSRKS AIMTKHTMTQ RLEQLQSENQ ETESVREDYI LATAELFMAK RELKEIKQEF SISVEERLAE LQKAEEAECS
201: SMVNSRKIKD MTEEIAEMRD TVLRLNTDAD KKKEEEEKIN EERMAAREAY AARKREAEQR LEDLRRDCDP ELRKEIDELA EISAGNERLQ EEIKLARELK
301: EAKSEMQEIC DEERSYKSLV GSLTVELDGV QRENRDLKEN EKERREVEEG EWVEASRKVE KIMREAEETR QEAEEMRMHV DELRREAAAT HMSMGEAVKQ
401: LEIVGKAVKK AKTAEKRAVE DMRVLTDKKE SLTQDEPDKK IRISMKEYEE LRGRHEESER MVQYKAKTVA AQLEEINASR VEGERMLEEK LKEMEEVNDA
501: IDAALRNAEI AEEAHCIVDA ELRKWKPQEL
001: MAKIRTDAPV MPPETPPRSS EVGEIDTRAP FQSVRDALSL FRQVSFSKKQ PPRLSSSSSS QSQDTTTDVS DKEMQLLLAE QEMDRVKICL DGSVAAKAQA
101: LSDLDSAQRK AADLRVKLES IKHSRKCAIS TKHTMNQRLE QLQSENQETE STREDYILIT AELFMAKYEL AELKQQFNLS VEERLAELQR AEEAECASMV
201: NSNKIKDMSH DIAEMRDAAE RLNSDAARKK EEEEQIKEES IALRETYVCK KLEAKQRLED LKRDCDPELK KDIEELMEIS TENERLQEEI KLSGELKEAK
301: SAMQEIYDEE SSYKSLVGSL TVELDGVQRE NRELKGKEKE RQEAEEGEWV EASRKVDEIM REAEKTRKEA EEMRMNVDEL RREAAAKHMV MGEAVKQLEI
401: VGRAVEKAKT AEKRAVEDMK VLTEKKESLT HDEPDKKIRI SLKEYEELRG KHEESERMVQ FKAKTVAAQL EEINESRIEG ERKLEEKIKE MEELKAAIDG
501: ALRKAEIAEE AHSIVDAELR KWKPQDL
101: LSDLDSAQRK AADLRVKLES IKHSRKCAIS TKHTMNQRLE QLQSENQETE STREDYILIT AELFMAKYEL AELKQQFNLS VEERLAELQR AEEAECASMV
201: NSNKIKDMSH DIAEMRDAAE RLNSDAARKK EEEEQIKEES IALRETYVCK KLEAKQRLED LKRDCDPELK KDIEELMEIS TENERLQEEI KLSGELKEAK
301: SAMQEIYDEE SSYKSLVGSL TVELDGVQRE NRELKGKEKE RQEAEEGEWV EASRKVDEIM REAEKTRKEA EEMRMNVDEL RREAAAKHMV MGEAVKQLEI
401: VGRAVEKAKT AEKRAVEDMK VLTEKKESLT HDEPDKKIRI SLKEYEELRG KHEESERMVQ FKAKTVAAQL EEINESRIEG ERKLEEKIKE MEELKAAIDG
501: ALRKAEIAEE AHSIVDAELR KWKPQDL
Arabidopsis Description
Putative WEB family protein At4g17210 [Source:UniProtKB/Swiss-Prot;Acc:O23564]
SUBAcon: [plastid,cytosol]
SUBAcon: [plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.