CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46119	Canola	nucleus	56.08	66.57
AT4G33390.1	Thale cress	nucleus	63.65	65.85
CDX72400	Canola	nucleus	55.09	65.29
Solyc05g042150.1.1	Tomato	cytosol	13.28	55.73
CDY48180	Canola	nucleus	50.25	54.88
CDX77048	Canola	nucleus	50.74	54.03
Solyc07g026880.1.1	Tomato	cytosol	10.3	53.9
Solyc04g078950.1.1	Tomato	nucleus	19.11	50.49
VIT_18s0001g10560.t01	Wine grape	nucleus	50.87	48.58
Solyc07g022910.2.1	Tomato	plastid	47.77	45.45
KRH07566	Soybean	nucleus	34.49	45.2
CDY22380	Canola	nucleus	39.58	44.37
PGSC0003DMT400039921	Potato	nucleus	47.02	44.28
Solyc12g088830.1.1	Tomato	nucleus	46.15	44.13
CDX71526	Canola	nucleus	39.45	43.92
CDY43212	Canola	nucleus	38.21	43.14
PGSC0003DMT400011385	Potato	nucleus	48.26	43.08
KRH45361	Soybean	nucleus	31.27	43.0
TraesCS1D01G248300.1	Wheat	nucleus, plastid	38.09	42.82
CDY17108	Canola	nucleus	38.59	42.54
CDY17054	Canola	nucleus	37.1	42.11
Solyc08g015840.1.1	Tomato	cytosol	10.17	41.84
CDY62582	Canola	nucleus	36.97	40.71
TraesCS1B01G259500.1	Wheat	nucleus	38.59	40.71
KRH51982	Soybean	nucleus	47.89	40.5
Os03t0395300-01	Rice	plasma membrane	38.83	40.34
HORVU2Hr1G030630.1	Barley	nucleus	39.58	40.23
GSMUA_Achr5P17590_001	Banana	nucleus	40.69	40.0
Zm00001d029420_P002	Maize	nucleus	38.71	39.8
TraesCS2A01G166400.1	Wheat	cytosol	39.08	39.72
TraesCS1A01G248800.1	Wheat	nucleus	38.21	39.49
GSMUA_Achr6P10120_001	Banana	nucleus	42.93	39.45
KRH61284	Soybean	nucleus	46.9	38.85
EER92167	Sorghum	nucleus	37.34	38.39
Os07t0619100-01	Rice	plasma membrane	38.83	38.31
KXG36701	Sorghum	nucleus	39.21	38.3
PGSC0003DMT400020677	Potato	nucleus	46.03	38.25
GSMUA_Achr10P...	Banana	cytosol	38.46	38.04
Zm00001d022161_P001	Maize	nucleus	37.59	37.88
TraesCS2B01G192300.1	Wheat	nucleus	39.45	37.81
TraesCS2D01G173700.1	Wheat	nucleus	39.33	37.69
KRH15355	Soybean	nucleus	47.02	37.52
Zm00001d047240_P002	Maize	nucleus	36.48	37.45
GSMUA_Achr9P27100_001	Banana	nucleus	37.47	36.74
GSMUA_Achr5P24580_001	Banana	cytosol	27.79	35.67
Os06t0314000-01	Rice	cytosol, nucleus	21.96	34.98
HORVU1Hr1G062330.8	Barley	nucleus	39.21	34.96
TraesCS4B01G300400.1	Wheat	nucleus	30.89	28.79
CDY28631	Canola	nucleus	19.85	24.54
CDY17364	Canola	nucleus	19.85	24.5
CDY36768	Canola	nucleus	19.11	23.88
CDY21038	Canola	cytosol	16.0	23.58
CDY31245	Canola	cytosol	15.76	23.18
CDY11973	Canola	nucleus	18.49	23.17
CDY42964	Canola	cytosol	14.89	23.08
CDX90485	Canola	cytosol	14.76	22.45
CDY09639	Canola	cytosol	14.76	22.41
CDY50127	Canola	cytosol	14.52	22.37
CDY35594	Canola	nucleus	14.39	22.18
CDY58167	Canola	cytosol	14.02	21.73
CDY11974	Canola	cytosol, nucleus, plastid	7.57	21.03
CDY15972	Canola	cytosol	17.87	16.05
CDY35593	Canola	cytosol	6.08	14.54
CDY26542	Canola	cytosol	17.87	14.27

Protein Annotations

EnsemblPlants:CDX68971	EnsemblPlantsGene:GSBRNA2T00130719001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2
PFAM:PF05701	ProteinID:CDX68971	ProteinID:CDX68971.1	SEG:seg	UniParc:UPI0004EE35DE	MapMan:20.5.8.1

Description

BnaC01g04820D

Coordinates

chrLK031789:+:2249403..2252845

Molecular Weight (calculated)

90294.6 Da

IEP (calculated)

4.832

GRAVY (calculated)

-0.773

Length

806 amino acids

Sequence
(BLAST)

001: MLTSLAKLLT ASQGKRNWWK VGKMKNKMMM LMMGLVSLNP LPPPVVCDRE IQQSYMVKLP PMEDLKLPEA VSPPPPEETS NDSGDVGITE PELQQPHANE
101: QQSESNEDST ENEKIYMDDT FLPSGLSSSQ AEEAQDFVSE IVLPRVKIKN GAVGAPRVPS RSLSSLRSLG SPRALLSPRF GVSSSPLSNG TPNSYRHSID
201: TASPFESVKE AVSKFGGITD WKAHRMEVLE RRKFVEQELE KLEEQIPEYK KNSETVEMSK FLAVEELENT KRLIEELKLN LDKAETEEKQ AKQDSDLAKM
301: RVEEMEQGIA GEASVATKAQ LEVAQARHTS AISELESVKE ELQALESEYD ALVEEKEVAV KEAEEAVKAS KEVERKVEEL TIELIASKES LECAHSSHLE
401: AEEHKIGAVV SRDQETHKWE KELKQAEEEL QKLKHHIVST KELKAKLDFA SALLLDLKKE LEDYNESSKE KSHADVQTAV ASAKKELEEV NVNIEKASSE
501: VKCLKVASSS LRMELEKERS ALDSIKKREG MASIAVESLD AEIDITRVEI ALVASKAKEA REETMELPKQ LHQAAQEADE AKSLAELARE ELRKSREEAE
601: KAKAGARTVE SRLVAAQKEI EASKASERLA LATIKALQES ESALKENSAD SPRSVTLTLD EYYELSKRAH EAEEAANAKV AAAVLEIEEA KETEKTNLER
701: LEEVNKEMDS RKKALAEAIE KAEKAKEGKM GVEQELRKWR EEHDVMRKND DDEVNTEKSH EEESKEKETE SNGTETNPTP QAVPGKKKKK LFPRFLMFMM
801: KKKSNK

Best Arabidopsis Sequence Match ( AT4G33390.1 )
(BLAST)

001: MEDLKTTDAL SLPVVSDNGG IIEPELQLPQ AIPTELENNE EENGTIQQSQ SEEDSAENGK IYMDDTFLPS KSQVKETQDS PTTPSFVSPS AEIVLPRVNT
101: KYEAEGTTRN AVSPRPLYSP RSIGSPRALL SPRFAGSSSP LSNGTPISMD SFRDSIDTAS PFESVKEAVS KFGGITDWKA HRMKVLERRN FVEQELDKIQ
201: EEIPEYKKKS EMVEMSKMLA VEELESTKRL IEELKLNLEK AETEEQQAKQ DSELAKLRVQ EMEQGIADEA SVASKAQLEV AQARHTSAIS ELESVKEELQ
301: TLQNEYDALV KEKDLAVKEA EEAVIASKEV ERKVEELTIE LIATKESLEC AHSSHLEAEE HRIGAAMLRD QETHRWEKEL KQAEEELQRL KQHLVSTKEL
401: QVKLEFASAL LLDLKKELAD HKESSKVKEE TSETVVTNIE ISLQEKTTDI QKAVASAKKE LEEVNANVEK ATSEVNCLKV ASSSLRLEID KEKSALDSLK
501: QREGMASVTV ASLEAEIDIT RCEIALVKSK EKETREEMVE LPKQLQQASQ EADEAKSFAE LAREELRKSQ EEAEQAKAGA STMESRLFAA QKEIEAIKAS
601: ERLALAAIKA LQESESSSKE NAVDSPRTVT LTIEEYYELS KRAHEAEEAA NARVAAAVSE VGEAKETEKR SLEKLEEVNK EMVERKATLA GAMEKAEKAK
701: EGKLGVEQEL RKWREVSEKK RKNGSSHGKS IQGSKEKEAE TSVSNETETN PIPQVNPVKK KKKLFPRFFM FLMKKKSHK

Arabidopsis Description

WEL1Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.