Factsheet for Solyc04g078950.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078950.1.1
Solyc05g042150.1.1
Solyc07g022910.2.1
Solyc07g026880.1.1
Solyc08g015840.1.1
Solyc12g088830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	Solyc04g078950.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc05g042150.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g022910.2.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g026880.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc08g015840.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc12g088830.1.1	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400020677	Potato	nucleus	96.07	30.21
Bra034308.1-P	Field mustard	nucleus	52.13	24.57
VIT_18s0001g10560.t01	Wine grape	nucleus	65.25	23.58
KRH07566	Soybean	nucleus	46.89	23.25
CDX72400	Canola	nucleus	51.48	23.09
Solyc07g022910.2.1	Tomato	plastid	63.61	22.9
CDY46119	Canola	nucleus	50.82	22.83
Os06t0314000-01	Rice	cytosol, nucleus	37.05	22.33
Solyc12g088830.1.1	Tomato	nucleus	61.64	22.3
KRH45361	Soybean	nucleus	42.62	22.18
Bra041137.1-P	Field mustard	nucleus	40.66	22.1
CDY48180	Canola	nucleus	53.44	22.09
AT2G26570.1	Thale cress	nucleus	57.05	21.56
CDX77048	Canola	nucleus	52.46	21.14
AT4G33390.1	Thale cress	nucleus	53.77	21.05
TraesCS1D01G248300.1	Wheat	nucleus, plastid	45.57	19.39
CDX68971	Canola	mitochondrion, nucleus, plastid	50.49	19.11
GSMUA_Achr5P17590_001	Banana	nucleus	50.16	18.66
Os03t0395300-01	Rice	plasma membrane	45.9	18.04
HORVU2Hr1G030630.1	Barley	nucleus	46.89	18.03
CDY22380	Canola	nucleus	41.97	17.8
Bra033647.1-P	Field mustard	nucleus	41.97	17.75
TraesCS2B01G192300.1	Wheat	nucleus	48.85	17.72
TraesCS1A01G248800.1	Wheat	nucleus	45.25	17.69
TraesCS1B01G259500.1	Wheat	nucleus	44.26	17.67
TraesCS2A01G166400.1	Wheat	cytosol	45.9	17.65
KRH51982	Soybean	nucleus	54.43	17.42
Bra040259.1-P	Field mustard	nucleus	41.64	17.35
CDX71526	Canola	nucleus	40.98	17.27
Zm00001d029420_P002	Maize	nucleus	44.26	17.22
Zm00001d022161_P001	Maize	nucleus	44.92	17.12
TraesCS2D01G173700.1	Wheat	nucleus	47.21	17.12
AT5G42880.1	Thale cress	nucleus	41.97	17.04
GSMUA_Achr6P10120_001	Banana	nucleus	48.85	16.99
CDY17108	Canola	nucleus	40.66	16.96
CDY62582	Canola	nucleus	40.66	16.94
KRH61284	Soybean	nucleus	53.77	16.86
KXG36701	Sorghum	nucleus	45.57	16.85
GSMUA_Achr9P27100_001	Banana	nucleus	45.25	16.79
GSMUA_Achr10P...	Banana	cytosol	44.26	16.56
Zm00001d047240_P002	Maize	nucleus	42.62	16.56
EER92167	Sorghum	nucleus	41.64	16.2
Os07t0619100-01	Rice	plasma membrane	43.28	16.16
KRH15355	Soybean	nucleus	52.79	15.94
AT1G45545.2	Thale cress	nucleus	38.36	15.54
HORVU1Hr1G062330.8	Barley	nucleus	45.9	15.49
CDY17054	Canola	nucleus	35.08	15.07
CDY43212	Canola	nucleus	34.75	14.85
Bra014049.1-P	Field mustard	nucleus	36.39	14.72
TraesCS4B01G300400.1	Wheat	nucleus	39.67	13.99
Solyc07g065680.2.1	Tomato	nucleus	27.54	12.44
GSMUA_Achr5P24580_001	Banana	cytosol	22.95	11.15
Solyc04g015110.2.1	Tomato	plastid	20.33	9.95
Solyc05g042150.1.1	Tomato	cytosol	0.66	1.04
Solyc07g026880.1.1	Tomato	cytosol	0.33	0.65
Solyc08g015840.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc04g078950.1.1	EnsemblPlantsGene:Solyc04g078950.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043
InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2	PFAM:PF05701	SEG:seg
UniParc:UPI0002766DFB	UniProt:K4BUX9	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4:-:63594018..63594935

Molecular Weight (calculated)

33663.3 Da

IEP (calculated)

5.324

GRAVY (calculated)

-0.917

Length

305 amino acids

Sequence
(BLAST)

001: MASVAAASLE AELSRTQSEI VLAQKKEKEA REKMVELPKQ LQEASQEADR AKSLAQMARD DLNKAKEEAE EAKAGASTVE SRLLAVKKEI EAAKAAEKLA
101: LAAIAALEES ESAQKTKDEE TPPGVTLSLE EYYELSKQAH EAEEQANKKV AEAHTQIDVA KESELRSLNR LEEVNREIAE RKEALGVALQ KAEKAKEGKL
201: SVEQELRKWR EEQEQRRKAS VSIPPTTGSP RKSDEENNES NTSESVPEAT ASYDSTSPKA QLQASSTEAE SSPDVKVPKK KKRSFFPRIF MFLGRRKAAQ
301: AKSAQ

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.