Factsheet for VIT_18s0001g10560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_18s0001g10560.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	VIT_18s0001g10560.t01	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g042150.1.1	Tomato	cytosol	15.17	66.67
Solyc04g078950.1.1	Tomato	nucleus	23.58	65.25
Bra034308.1-P	Field mustard	nucleus	49.29	64.3
Solyc07g026880.1.1	Tomato	cytosol	11.49	62.99
CDY48180	Canola	nucleus	51.07	58.4
CDX77048	Canola	nucleus	50.83	56.67
AT2G26570.1	Thale cress	nucleus	54.03	56.51
Solyc07g022910.2.1	Tomato	plastid	55.33	55.14
AT4G33390.1	Thale cress	nucleus	49.05	53.15
KRH07566	Soybean	nucleus	38.51	52.85
PGSC0003DMT400039921	Potato	nucleus	53.32	52.57
CDY46119	Canola	nucleus	42.06	52.28
PGSC0003DMT400011385	Potato	nucleus	55.92	52.27
Bra041137.1-P	Field mustard	nucleus	34.72	52.23
CDX72400	Canola	nucleus	41.82	51.91
Solyc12g088830.1.1	Tomato	nucleus	51.78	51.84
CDX68971	Canola	mitochondrion, nucleus, plastid	48.58	50.87
KRH51982	Soybean	nucleus	56.87	50.37
KRH61284	Soybean	nucleus	56.75	49.23
KRH45361	Soybean	nucleus	34.12	49.15
PGSC0003DMT400020677	Potato	nucleus	54.74	47.63
TraesCS1D01G248300.1	Wheat	nucleus, plastid	40.4	47.56
GSMUA_Achr6P10120_001	Banana	nucleus	48.46	46.64
Os03t0395300-01	Rice	plasma membrane	42.77	46.52
CDY22380	Canola	nucleus	39.57	46.45
Bra033647.1-P	Field mustard	nucleus	39.57	46.32
CDX71526	Canola	nucleus	38.63	45.03
HORVU2Hr1G030630.1	Barley	nucleus	42.3	45.02
Solyc08g015840.1.1	Tomato	cytosol	10.43	44.9
TraesCS2A01G166400.1	Wheat	cytosol	42.18	44.89
Zm00001d029420_P002	Maize	nucleus	41.59	44.77
EER92167	Sorghum	nucleus	41.35	44.52
TraesCS1B01G259500.1	Wheat	nucleus	40.28	44.5
TraesCS1A01G248800.1	Wheat	nucleus	41.0	44.36
AT5G42880.1	Thale cress	nucleus	38.98	43.81
GSMUA_Achr5P17590_001	Banana	nucleus	42.54	43.78
Zm00001d047240_P002	Maize	nucleus	40.52	43.57
Zm00001d022161_P001	Maize	nucleus	41.11	43.38
KRH15355	Soybean	nucleus	51.9	43.37
GSMUA_Achr9P27100_001	Banana	nucleus	42.06	43.19
KXG36701	Sorghum	nucleus	42.06	43.03
TraesCS2B01G192300.1	Wheat	nucleus	42.54	42.69
AT1G45545.2	Thale cress	nucleus	38.03	42.63
GSMUA_Achr10P...	Banana	cytosol	41.0	42.45
CDY43212	Canola	nucleus	35.9	42.44
CDY17108	Canola	nucleus	36.73	42.41
TraesCS2D01G173700.1	Wheat	nucleus	42.18	42.33
CDY17054	Canola	nucleus	35.55	42.25
Bra040259.1-P	Field mustard	nucleus	36.61	42.21
Bra014049.1-P	Field mustard	nucleus	37.56	42.04
CDY62582	Canola	nucleus	36.37	41.94
Os07t0619100-01	Rice	plasma membrane	39.93	41.25
Os06t0314000-01	Rice	cytosol, nucleus	24.05	40.12
GSMUA_Achr5P24580_001	Banana	cytosol	29.03	39.01
HORVU1Hr1G062330.8	Barley	nucleus	41.47	38.72
TraesCS4B01G300400.1	Wheat	nucleus	32.58	31.79
VIT_19s0015g00740.t01	Wine grape	nucleus	19.31	25.08

Protein Annotations

EntrezGene:100260913	wikigene:100260913	MapMan:20.5.8.1	ProteinID:CCB45845	ProteinID:CCB45845.1	ncoils:Coil
UniProt:F6GZZ5	EMBL:FN595227	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009903	GO:GO:0009904	GO:GO:0009987	GO:GO:0016043
EntrezGene:LOC100260913	wikigene:LOC100260913	PFAM:PF05701	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2	UniParc:UPI000198546C
ArrayExpress:VIT_18s0001g10560	EnsemblPlantsGene:VIT_18s0001g10560	EnsemblPlants:VIT_18s0001g10560.t01	unigene:Vvi.9514	InterPro:Web	RefSeq:XP_002282770
RefSeq:XP_002282770.1	RefSeq:XP_019072225.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:8874254..8880423

Molecular Weight (calculated)

93376.9 Da

IEP (calculated)

4.795

GRAVY (calculated)

-0.784

Length

844 amino acids

Sequence
(BLAST)

001: MEDAKNAEEK SPTEPSLSSQ DNNHSSNESL ISPVINGEVE SNSEALTVDT SKLAAVDASD TPSLGQDQLP PTDISTPMSP VTVDEAEPDH PGTVKGDSET
101: GVVTSDGPQS CDGNFVTNAH VHVDVIPSAS SPEIRDSTGD DHVGQSDELS LPQVMFSNAA VGTPEPFSAS KHVKQFDVTR AHVDTAAPFE SVKEAVSKFG
201: GIVDWKAHRI QTVERRKLVE RELEKAREDI PEYRKQAEDA EDAKTQALKE LDSTKRLIEE LKLNLERAQT EEHQAKQDSE LAKLRVEEME QGIADEASVA
301: AKAQLEVAKA RHAAAVADLK AVKDELEALR KEYASLVTEK DVAVKRAEQA VSASKEIEKT VEELTIELIA TKEALESAHA THLEAEEQRI GMAMVKEQDS
401: LNWEKELKQA EEELQKLNEQ VVSRKDLKSK LDTASALLLD LKAELAAYME SKLKQETNEE HLQGELEEPE KKTHTDLQAA IASAKKELEE VKLNIEKATT
501: EVNYLKVAAT SLQSELQKEK SALATIRQRE GIASVAAASL EAELNSTKSE IALVQMKERE AREKMAELPK QLQQAAQEAD QAKSLAQMAW EELRKAKEEA
601: EQAKAGASTM ESRLLAAQKE IEAAKASEKL ALAAIKALQE SESARDTNDE DSPTGVTLAL EEYYELSKRA HEAEEQANMR VVAAMSQIEV AKESELRSLD
701: QLEAVNQELA TRKEALNHAL EKAEKAKEGK LGVEQELRKW RAEHEQRRKA SESGQGVVNP IRSPRKSFED RSLEERKESK NFDRGPEPAA AIHYRASPKP
801: YMQGNSTETE SSPETKSMKK KKRSMFPRFF MFFTRRKSHS SKST

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.