Factsheet for VIT_19s0015g00740.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH46399	Soybean	cytosol	70.77	70.44
KRG98464	Soybean	mitochondrion	70.62	70.29
KRH75103	Soybean	nucleus	25.23	68.33
Solyc07g065680.2.1	Tomato	nucleus	67.38	64.89
PGSC0003DMT400057359	Potato	nucleus	66.92	64.44
KRH73920	Soybean	nucleus	60.46	60.55
GSMUA_Achr4P18510_001	Banana	nucleus	53.69	56.93
AT5G55860.1	Thale cress	nucleus	56.0	56.09
CDY17364	Canola	nucleus	56.31	56.05
GSMUA_Achr7P16580_001	Banana	cytosol	53.08	56.01
Bra002870.1-P	Field mustard	nucleus	56.15	55.9
CDY28631	Canola	nucleus	55.85	55.67
Os12t0271600-01	Rice	plasma membrane	53.85	54.1
CDY11973	Canola	nucleus	52.77	53.34
OQU79020	Sorghum	nucleus	52.92	52.84
CDY36768	Canola	nucleus	52.31	52.71
Bra028956.1-P	Field mustard	nucleus	52.0	52.48
Zm00001d023629_P001	Maize	nucleus	52.31	52.15
Zm00001d041088_P004	Maize	nucleus	51.69	51.77
TraesCS4B01G127500.1	Wheat	nucleus	48.77	50.0
TraesCS4A01G188200.1	Wheat	nucleus	48.77	49.84
TraesCS4D01G125200.1	Wheat	nucleus	48.46	49.68
HORVU5Hr1G029890.1	Barley	nucleus	48.15	48.53
TraesCS5A01G098800.2	Wheat	cytosol	47.38	48.2
TraesCS5B01G103500.1	Wheat	nucleus	47.38	48.2
TraesCS5D01G110400.2	Wheat	cytosol	47.23	48.04
CDY11974	Canola	cytosol, nucleus, plastid	21.38	47.93
GSMUA_AchrUn_...	Banana	nucleus	44.62	45.81
VIT_18s0001g10560.t01	Wine grape	nucleus	25.08	19.31

Protein Annotations

EntrezGene:100263439	wikigene:100263439	MapMan:35.1	EMBL:AM477619	ProteinID:CAN64061	ProteinID:CAN64061.1
ProteinID:CCB62024	ProteinID:CCB62024.1	ncoils:Coil	UniProt:F6I569	EMBL:FN596747	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903
GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100263439	wikigene:LOC100263439	PFAM:PF05701
PANTHER:PTHR32054	PANTHER:PTHR32054:SF3	UniParc:UPI00015CB94D	ArrayExpress:VIT_19s0015g00740	EnsemblPlantsGene:VIT_19s0015g00740	EnsemblPlants:VIT_19s0015g00740.t01
InterPro:Web	RefSeq:XP_002266660	RefSeq:XP_002266660.1	RefSeq:XP_019072691.1	SEG:seg	:

Description

No Description!

Coordinates

chr19:+:8871654..8877880

Molecular Weight (calculated)

71851.5 Da

IEP (calculated)

5.212

GRAVY (calculated)

-0.835

Length

650 amino acids

Sequence
(BLAST)

001: MGTKDRQNAT DNSKVEVGEI DTSAPFQSVK DAVSLFGEFS GEKPSIRKAK PHSAERVLAK ETQLHLAQKE LNKLKEQLKN AETTKAQALV ELDKAKRTVE
101: DLNQKLTTVS ESKESAVKAT EAAKNQAKQL VEANTGNPAE TDGAWKQDME TGKQQYTTII VELDAVKQEV IKTRQDCDAS LEGKAAAFKQ ADEAEQVAKA
201: NMERASELSK EISAVQESIG QVKLASEQAQ QEQAKLYAEK DVQRQSYRAT LEESAKKLFA LKEAFDPELT RNLEAQLAET VSEIGAVKKE MENARASDLD
301: SVKTVTLELD DAKESLHKVA DEESSLRNLV ESLKRELENV KKEHSEMKEK EAETESIAGN LHVKLRKSKS ELEACLAEES KARGASDEMI STLHQLSLET
401: ETARQEAEEM MKKAEELKKE AQATKSALEE AEKKLRVALE EAEEAKVAET KALDQIKILA ERTNAARAST SESGANITIS TEEFKALSRK VEESDTLAEM
501: KVAAAMAQVE AVKASEQEAI KRLEATQKEI EEMKAATEAA LKRAETAEAA KRAVEGELRK WRERDQKKAA EAASRILAES EMSSESSPRQ YRIQKQNPPQ
601: KINEGGRKME KEKSSVSKKA LLPNLSGIFH RKKNQIEGGS PSYLPGEKPI

Best Arabidopsis Sequence Match ( AT5G55860.1 )
(BLAST)

001: MVAKKGRRDS SDSSPIVEVG EIDTSAPFQS VKDAVNLFGE AAFSAEKPVF RKPNPQSAEK VLVKQTELHL AQKELNKLKE QLKNAETIRE QALSELEWSK
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF

Arabidopsis Description

WEB family protein At5g55860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.