CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36768	Canola	nucleus	90.51	90.23
CDY11974	Canola	cytosol, nucleus, plastid	40.44	89.66
CDY17364	Canola	nucleus	80.25	79.02
AT5G55860.1	Thale cress	nucleus	79.16	78.43
CDY28631	Canola	nucleus	79.47	78.37
KRH75103	Soybean	nucleus	20.37	54.58
VIT_19s0015g00740.t01	Wine grape	nucleus	53.34	52.77
KRG98464	Soybean	mitochondrion	52.57	51.76
KRH46399	Soybean	cytosol	51.79	51.0
PGSC0003DMT400057359	Potato	nucleus	52.88	50.37
Solyc07g065680.2.1	Tomato	nucleus	52.88	50.37
GSMUA_Achr4P18510_001	Banana	nucleus	45.41	47.63
GSMUA_Achr7P16580_001	Banana	cytosol	45.57	47.56
KRH73920	Soybean	nucleus	45.41	44.99
Os12t0271600-01	Rice	plasma membrane	44.79	44.51
OQU79020	Sorghum	nucleus	44.79	44.24
Zm00001d041088_P004	Maize	nucleus	44.32	43.91
Zm00001d023629_P001	Maize	nucleus	43.55	42.94
TraesCS4A01G188200.1	Wheat	nucleus	42.3	42.77
TraesCS4B01G127500.1	Wheat	nucleus	42.15	42.74
TraesCS4D01G125200.1	Wheat	nucleus	41.99	42.59
TraesCS5B01G103500.1	Wheat	nucleus	41.84	42.1
TraesCS5A01G098800.2	Wheat	cytosol	41.68	41.94
HORVU5Hr1G029890.1	Barley	nucleus	41.99	41.86
TraesCS5D01G110400.2	Wheat	cytosol	40.75	41.0
GSMUA_AchrUn_...	Banana	nucleus	38.1	38.7
CDY21038	Canola	cytosol	30.79	36.2
CDY31245	Canola	cytosol	30.64	35.95
CDY58167	Canola	cytosol	21.93	27.12
CDY09639	Canola	cytosol	21.93	26.55
CDY50127	Canola	cytosol	21.46	26.39
CDX90485	Canola	cytosol	21.62	26.23
CDY35594	Canola	nucleus	21.31	26.2
CDY42964	Canola	cytosol	21.15	26.15
CDY15972	Canola	cytosol	31.73	22.74
CDY48180	Canola	nucleus	23.64	20.6
CDX77048	Canola	nucleus	23.79	20.21
CDY46119	Canola	nucleus	21.0	19.88
CDY26542	Canola	cytosol	30.95	19.72
CDX71526	Canola	nucleus	21.77	19.34
CDX72400	Canola	nucleus	20.37	19.26
CDY22380	Canola	nucleus	21.46	19.19
CDX68971	Canola	mitochondrion, nucleus, plastid	23.17	18.49
CDY17054	Canola	nucleus	20.22	18.31
CDY43212	Canola	nucleus	18.82	16.95
CDY62582	Canola	nucleus	19.28	16.94
CDY17108	Canola	nucleus	19.13	16.83
CDY35593	Canola	cytosol	7.15	13.65

Protein Annotations

EnsemblPlants:CDY11973	EnsemblPlantsGene:GSBRNA2T00060822001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF3
PFAM:PF05701	ProteinID:CDY11973	ProteinID:CDY11973.1	SEG:seg	UniParc:UPI0004EF3455	UniProt:A0A078FIP2
MapMan:35.1	:	:	:	:	:

Description

BnaC03g13990DBnaC03g13990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIP2]

Coordinates

chrLK032015:-:671288..673414

Molecular Weight (calculated)

71625.3 Da

IEP (calculated)

4.735

GRAVY (calculated)

-0.745

Length

643 amino acids

Sequence
(BLAST)

001: MVAKKGRQDS SPSVEVGEID TSAPFQSVKH AVNLFGEAAL SADNHPLIRK PTPHSAEKVL VKQTELHLAQ KELNKLKEQV QNAESVTEQA LSELDWAKRT
101: VDELTHKLEA VNESRDSADK VTEAAKSQIK EAKPETVPVP SSDDEYVTVC KELDAAKQEL RIIRQVSNEV SDTKTVALTR EEEAKEVTKV YSDKIELLRE
201: EITAVNESVE QTKLACSQSR KEQSEIFSEK EIQQQLYKAG MEESAKKLLT LKKEFDPEFA KKLEAQLSET YNEIDELQKQ MEDTKASSDV DSVNGVSLEL
301: NEAKGLLEKF VEEEKSLQES VESLKEELKN VKMERSEVEA KEAEIEAVAG DLNLKLSKGK SELEECFGEE TKAKAALEDM MSTLNQISSE TEAARGEAEE
401: MRNKAERLVK DAETAYLSLE EIELNLRVAL DEAEEAKAAE SKALEEIKSM SEKTDAVRKS TSSESGGAQS ITLSQEELNS LRKRAEVVDK LADMKVAAAV
501: AQVEAVRASE NETVKKLETT QEEIEKIKTS TEEALKKAAM ADAAKKAVEG ELRRWRERDQ KKAEEVASRI LAEAEAKMSA ESSSPQHHYK AIKQKPIINK
601: LEKTKTSVVS KKVLLPNLSG IFNRKKNQME WGSPSYLPGE KPI

Best Arabidopsis Sequence Match ( AT5G55860.1 )
(BLAST)

001: MVAKKGRRDS SDSSPIVEVG EIDTSAPFQS VKDAVNLFGE AAFSAEKPVF RKPNPQSAEK VLVKQTELHL AQKELNKLKE QLKNAETIRE QALSELEWSK
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF

Arabidopsis Description

WEB family protein At5g55860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.