Factsheet for PGSC0003DMT400057359

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g065680.2.1	Tomato	nucleus	92.3	92.3
VIT_19s0015g00740.t01	Wine grape	nucleus	64.44	66.92
KRG98464	Soybean	mitochondrion	61.93	64.01
KRH75103	Soybean	nucleus	22.67	63.75
KRH46399	Soybean	cytosol	61.19	63.25
Bra002870.1-P	Field mustard	nucleus	54.52	56.36
CDY28631	Canola	nucleus	54.37	56.29
CDY17364	Canola	nucleus	54.37	56.2
AT5G55860.1	Thale cress	nucleus	53.93	56.09
GSMUA_Achr4P18510_001	Banana	nucleus	50.37	55.46
GSMUA_Achr7P16580_001	Banana	cytosol	49.78	54.55
KRH73920	Soybean	nucleus	52.15	54.24
CDY36768	Canola	nucleus	50.81	53.18
CDY11973	Canola	nucleus	50.37	52.88
Bra028956.1-P	Field mustard	nucleus	50.22	52.64
CDY11974	Canola	cytosol, nucleus, plastid	22.37	52.07
Os12t0271600-01	Rice	plasma membrane	49.48	51.62
OQU79020	Sorghum	nucleus	49.04	50.84
Zm00001d041088_P004	Maize	nucleus	48.15	50.08
Zm00001d023629_P001	Maize	nucleus	47.7	49.39
TraesCS4B01G127500.1	Wheat	nucleus	46.37	49.37
TraesCS4A01G188200.1	Wheat	nucleus	46.22	49.06
TraesCS4D01G125200.1	Wheat	nucleus	45.93	48.9
HORVU5Hr1G029890.1	Barley	nucleus	45.63	47.75
TraesCS5A01G098800.2	Wheat	cytosol	44.89	47.42
TraesCS5B01G103500.1	Wheat	nucleus	44.59	47.1
TraesCS5D01G110400.2	Wheat	cytosol	44.0	46.48
GSMUA_AchrUn_...	Banana	nucleus	39.85	42.5
PGSC0003DMT400050839	Potato	nucleus	34.52	37.52
PGSC0003DMT400034621	Potato	mitochondrion, plastid	24.74	37.03
PGSC0003DMT400039921	Potato	nucleus	24.0	18.93
PGSC0003DMT400011385	Potato	nucleus	23.26	17.39
PGSC0003DMT400020677	Potato	nucleus	24.3	16.91

Protein Annotations

EnsemblPlants:PGSC0003DMT400057359	EnsemblPlantsGene:PGSC0003DMG400022271	EntrezGene:102580057	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054
PANTHER:PTHR32054:SF3	PFAM:PF05701	PGSC:PGSC0003DMG400022271	RefSeq:XP_006346124.1	SEG:seg	UniParc:UPI000295ABBD
UniProt:M1C0W9	MapMan:35.1	:	:	:	:

Description

Paramyosin [Source:PGSC_GENE;Acc:PGSC0003DMG400022271]

Coordinates

chr7:+:55720508..55726281

Molecular Weight (calculated)

75285.4 Da

IEP (calculated)

5.561

GRAVY (calculated)

-0.796

Length

675 amino acids

Sequence
(BLAST)

001: MVSKDRKKPT GSPKVQVGEI DTSAPFQSVK DAVNLFGEGA FSGEKPAIRK PRPQSAERVL AKETQLHLAQ KELNKLKEQL KNAETTRAQA LTELERAKRT
101: VDDLTKKLKI VCESKDLAVK ATEAAKSQVN QLEAPNDGSV MGKDGSWKVD LETAREKYMA EIADLDKAKQ ELRKIRQDCN TFMEEKTGAI EQAAEAERTA
201: KANMERASEL SKEIAAVHES VDQLKLACVQ EQEEEAKIYA EKNVQKQSYK AKLEESAEKL LALKKETDAD LAKSLEAQLA ETMSEIEALR KEMDSAKSSD
301: LDTVKVVTAE LDDAKDSLLK VAEEESTLQT LVETLKLDLE NVKKEHSDLK EKEAETESLA GGLHVKLRKA KSELEVAVAE EAKARGASEE MISTLHQLTL
401: ETENAKLEAE EMKMQAEDLK KEAEATRMAL EEAEKKLKVA MEEAEEAKSA EAEARDQIKI LSEKTTAARS STSEAGARIT LSRDEFDSLS RKVEELDNLA
501: EIRVGAAMAQ VEAVKASEYE ALKKLEATQK EIDYIKTATQ EALKKAEMAE AAKKAVEGEL RRWREREQKK AAEAASRILA ETHMNYRSSP QSYTVQKEKP
601: SEKFMESHLK MHSPIETKKQ NTQENIMETH KLQKAKTSVS KKKVLMPSIS GIFHKKKNQV EGNSPSYLPG EKPVW

Best Arabidopsis Sequence Match ( AT5G55860.1 )
(BLAST)

001: MVAKKGRRDS SDSSPIVEVG EIDTSAPFQS VKDAVNLFGE AAFSAEKPVF RKPNPQSAEK VLVKQTELHL AQKELNKLKE QLKNAETIRE QALSELEWSK
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF

Arabidopsis Description

WEB family protein At5g55860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.