Factsheet for PGSC0003DMT400050839

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015110.2.1	Tomato	plastid	91.47	91.17
PGSC0003DMT400034621	Potato	mitochondrion, plastid	36.39	50.11
KRH36620	Soybean	cytosol, mitochondrion, nucleus	37.36	40.21
KRH11615	Soybean	cytosol, mitochondrion, nucleus	37.2	40.1
KRH51206	Soybean	cytosol	35.27	39.82
Os12t0271600-01	Rice	plasma membrane	40.74	39.1
OQU79020	Sorghum	nucleus	40.1	38.25
Zm00001d023629_P001	Maize	nucleus	39.94	38.04
Zm00001d041088_P004	Maize	nucleus	39.29	37.6
KRH01945	Soybean	cytosol, mitochondrion, nucleus	33.98	36.76
GSMUA_Achr4P18510_001	Banana	nucleus	35.75	36.22
GSMUA_Achr7P16580_001	Banana	cytosol	35.59	35.88
TraesCS4B01G127500.1	Wheat	nucleus	36.23	35.49
TraesCS4A01G188200.1	Wheat	nucleus	36.23	35.38
TraesCS4D01G125200.1	Wheat	nucleus	36.07	35.33
TraesCS5B01G103500.1	Wheat	nucleus	36.07	35.05
Bra016786.1-P	Field mustard	cytosol	30.76	34.92
TraesCS5A01G098800.2	Wheat	cytosol	35.91	34.9
CDY31245	Canola	cytosol	30.76	34.85
CDY21038	Canola	cytosol	30.6	34.73
PGSC0003DMT400057359	Potato	nucleus	37.52	34.52
AT1G12150.2	Thale cress	cytosol	30.43	34.49
TraesCS5D01G110400.2	Wheat	cytosol	35.27	34.27
HORVU5Hr1G029890.1	Barley	nucleus	35.27	33.95
GSMUA_AchrUn_...	Banana	nucleus	33.66	33.02
AT4G17210.1	Thale cress	cytosol, plastid	26.25	30.93
CDY35594	Canola	nucleus	24.32	28.87
CDY09639	Canola	cytosol	24.64	28.81
CDX90485	Canola	cytosol	24.48	28.68
CDY58167	Canola	cytosol	23.83	28.46
Bra021064.1-P	Field mustard	cytosol	23.67	28.21
CDY50127	Canola	cytosol	23.67	28.11
Bra026233.1-P	Field mustard	cytosol	23.51	28.02
CDY42964	Canola	cytosol	23.19	27.69
CDY15972	Canola	cytosol	29.31	20.29
CDY26542	Canola	cytosol	30.92	19.03
Bra026987.1-P	Field mustard	cytosol	30.6	18.83
PGSC0003DMT400039921	Potato	nucleus	23.51	17.06
PGSC0003DMT400011385	Potato	nucleus	24.15	16.61
PGSC0003DMT400020677	Potato	nucleus	24.32	15.57

Protein Annotations

EnsemblPlants:PGSC0003DMT400050839	EnsemblPlantsGene:PGSC0003DMG400019747	EntrezGene:102604190	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054
PANTHER:PTHR32054:SF3	PFAM:PF05701	PGSC:PGSC0003DMG400019747	RefSeq:XP_006350270.1	SEG:seg	UniParc:UPI00029547CD
UniProt:M1BQZ0	MapMan:35.1	:	:	:	:

Description

Paramyosin [Source:PGSC_GENE;Acc:PGSC0003DMG400019747]

Coordinates

chr4:+:9267728..9270273

Molecular Weight (calculated)

69001.2 Da

IEP (calculated)

4.820

GRAVY (calculated)

-0.930

Length

621 amino acids

Sequence
(BLAST)

001: MFGFSIRTGR QNASGSPSSK TGSPSSVGSP KTAGSTGSPK TEVGEIDTRA PFQSVRAAVS LFGDTGSSPQ AKPTIKRSKT IEERVLEKES RLHLALRELD
101: GFKEQIRSTE TTKTHALRDL EKAKRTLQEL TGKLETLCET KQAAIEATET AKARAIELEE QKSNKPPVGT DAWKQNVEAE REQYRTSSGE LNSAKQELTN
201: LRQDFDAALT AKLAAFQEAA DAQHNAAINR ERLGKLSKEV TTLRETLGQV KVASLQAQDE HEKIIQDKEV HLHSLKTAKE EAEEKIRTLK EDPDSQLVTE
301: NLVEKLEVTN EAIHVLQEQL NKVQALDLDA YNKANEELNA TKNMLKEIVA EESSLRAIVE SLKQEAECVK GELNELKKKA EETESLVENL KLELENSKKD
401: LETSISAKTQ AEGDSNDLPS RIQQLTSEAN QYTKEANEMK KNTELFKQDA QSAHETTKET EEKLKIALKE AEEAKAAEKV ADEKIHNQSR NNKTDNSTDD
501: NNDEKHSSSE SSNGKIRLSV EEFEALKRKV EGIKNDADIK VATVMAQVET INANEKQANE KLEGLLKEKE DIKTATQEAL KTTEMAEAAK LVVEGELQKW
601: RIKEQEEEEI GESSNGNVEE T

Best Arabidopsis Sequence Match ( AT1G12150.2 )
(BLAST)

001: MVNIRVQKAP ESPRTMEVGE IDTRAPFQSV KAAVSLFGEV AVSKQRSTPR RSRLSSESVC DKETQLMLVH KEFMKIKQKL DNAESTRSRA LDDLSKAKKT
101: MEDLSNKLET VNKSKQSAID TKETVQQREE QLEHDKCHGS PPHHHELDVA REQYISTTVE LDAAKQQLNK IRQSFDSAMD FKATALNQAA EAQRALQVNS
201: AKVNELSKEI SDMKDAIHQL KLAAAQNLQE HANIVKEKDD LRECYRTAVE EAEKKLLVLR KEYEPELSRT LEAKLLETTS EIEVLREEMK KAHESEMNTV
301: KIITNELNEA TMRLQEAADD ECSLRSLVNS LRMELEDLRR EREELQQKEA ERLEIEETKK LEALKQESLK LEQMKTEAIE ARNEAANMNR KIESLKKETE
401: AAMIAAEEAE KRLELVIREV EEAKSAEEKV REEMKMISQK QESKKQDEES SGSKIKITIQ EFESLKRGAG ETEAAIEKKL ATIAAELEEI NKRRAEADNK
501: LEANLKAIEE MKQATELAQK SAESAEAAKR MVESELQRWR QQENVQLA

Arabidopsis Description

WEB family protein At1g12150 [Source:UniProtKB/Swiss-Prot;Acc:Q9FWW5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.