Factsheet for HORVU5Hr1G029890.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G103500.1	Wheat	nucleus	92.56	93.43
TraesCS5A01G098800.2	Wheat	cytosol	91.94	92.8
TraesCS5D01G110400.2	Wheat	cytosol	86.82	87.64
Os12t0271600-01	Rice	plasma membrane	79.07	78.83
OQU79020	Sorghum	nucleus	78.76	78.03
Zm00001d041088_P004	Maize	nucleus	75.81	75.35
Zm00001d023629_P001	Maize	nucleus	74.42	73.62
GSMUA_Achr4P18510_001	Banana	nucleus	53.8	56.61
GSMUA_Achr7P16580_001	Banana	cytosol	51.01	53.41
VIT_19s0015g00740.t01	Wine grape	nucleus	48.53	48.15
GSMUA_AchrUn_...	Banana	nucleus	46.05	46.92
KRG98464	Soybean	mitochondrion	47.44	46.86
KRH46399	Soybean	cytosol	46.98	46.4
PGSC0003DMT400057359	Potato	nucleus	47.75	45.63
Solyc07g065680.2.1	Tomato	nucleus	47.44	45.33
CDY28631	Canola	nucleus	44.5	44.02
AT5G55860.1	Thale cress	nucleus	44.19	43.91
Bra002870.1-P	Field mustard	nucleus	44.19	43.64
CDY17364	Canola	nucleus	44.03	43.49
KRH75103	Soybean	nucleus	16.12	43.33
Bra028956.1-P	Field mustard	nucleus	42.48	42.55
CDY36768	Canola	nucleus	42.33	42.33
KRH73920	Soybean	nucleus	42.33	42.06
CDY11973	Canola	nucleus	41.86	41.99
CDY11974	Canola	cytosol, nucleus, plastid	17.67	39.31
KRH11615	Soybean	cytosol, mitochondrion, nucleus	34.42	38.54
KRH36620	Soybean	cytosol, mitochondrion, nucleus	33.64	37.61
KRH51206	Soybean	cytosol	31.78	37.27
PGSC0003DMT400034621	Potato	mitochondrion, plastid	25.27	36.14
AT1G12150.2	Thale cress	cytosol	30.7	36.13
CDY31245	Canola	cytosol	30.7	36.13
Bra016786.1-P	Field mustard	cytosol	30.54	36.01
CDY21038	Canola	cytosol	30.39	35.83
KRH01945	Soybean	cytosol, mitochondrion, nucleus	31.47	35.37
PGSC0003DMT400050839	Potato	nucleus	33.95	35.27
Solyc04g015110.2.1	Tomato	plastid	33.95	35.15
CDY42964	Canola	cytosol	24.34	30.19
CDX90485	Canola	cytosol	24.81	30.19
CDY09639	Canola	cytosol	24.65	29.94
Bra026233.1-P	Field mustard	cytosol	24.03	29.75
CDY35594	Canola	nucleus	23.88	29.45
CDY58167	Canola	cytosol	23.57	29.23
AT4G17210.1	Thale cress	cytosol, plastid	23.41	28.65
CDY50127	Canola	cytosol	23.1	28.49
Bra021064.1-P	Field mustard	cytosol	22.64	28.02
CDY15972	Canola	cytosol	30.7	22.07
HORVU2Hr1G030630.1	Barley	nucleus	24.5	19.92
Bra026987.1-P	Field mustard	cytosol	30.23	19.33
CDY26542	Canola	cytosol	29.92	19.13
HORVU4Hr1G089990.4	Barley	cytosol, nucleus, plastid	20.78	17.56
HORVU1Hr1G062330.8	Barley	nucleus	23.88	17.04
HORVU5Hr1G068440.1	Barley	cytosol	20.47	16.5

Protein Annotations

EnsemblPlants:HORVU5Hr1G029890.1	EnsemblPlantsGene:HORVU5Hr1G029890	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF3
PFAM:PF05701	SEG:seg	UniParc:UPI0002965F71	UniProt:M0YZ08	MapMan:35.1	:

Description

No Description!

Coordinates

chrchr5H:+:181752434..181757445

Molecular Weight (calculated)

71085.1 Da

IEP (calculated)

5.514

GRAVY (calculated)

-0.721

Length

645 amino acids

Sequence
(BLAST)

001: MAMKVGPPST DAEKLEVGEI DTRAPFESVK AAVSLFGEVR FSSDKSAARK PKAPQAEKML AKETELHLAQ KELNKYKEQL SNAETARLQA LSELEKARKT
101: VDELTTKLDA INKSKEVAIQ AMEDTKTRTK QLEGGSPKEA VRKDSPLKQE LDSAKQQYVV ALADLDAAKQ ELRKLKKDFE TSLDMRLSAA QKEEESLHSI
201: EANKEKAAQL HNEAKAIQES LLHMKAATEQ LQEAESQVLA EKGVARNTYK QDLEETEIKL SYLRSEFDPA AYKTIKQKLD ETNSEISSMQ KKIEDARVLD
301: LETVASITTE LDDAKEMLQK VAEEESTLRN LVESLKLELA AVKQDHSQLK EKDTDTESIV ADLHVKLQKC KSELEVAVCA ESKAATASDD LMLALQQLSR
401: ESKTALQEAE MMQKSATELR TEAEAARVAL TEAEEMLQSA LKEAEEAKAA EAKALDQIKQ LSDRASAVQA STSEPGGKVT ISKAEFESLS RKVKESEKLS
501: EMKVAAAVAQ VEAVRASENE AIQKMKTARR EMEDMELATE EALKRAEMAE AAKKAVEGEL KRWREKEQKK AAESVSSAEG QAHATTPSSV HKASAGKATE
601: KNDGHQRSNR TLLRKGFVLP NITGIFHKKK SHVDGSSPSP GEKSV

Best Arabidopsis Sequence Match ( AT5G55860.1 )
(BLAST)

001: MVAKKGRRDS SDSSPIVEVG EIDTSAPFQS VKDAVNLFGE AAFSAEKPVF RKPNPQSAEK VLVKQTELHL AQKELNKLKE QLKNAETIRE QALSELEWSK
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF

Arabidopsis Description

WEB family protein At5g55860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.