Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002870.1-P | Field mustard | nucleus | 87.06 | 86.52 |
| CDY17364 | Canola | nucleus | 86.9 | 86.37 |
| CDY28631 | Canola | nucleus | 86.13 | 85.74 |
| CDY36768 | Canola | nucleus | 79.51 | 80.0 |
| Bra028956.1-P | Field mustard | nucleus | 79.04 | 79.66 |
| CDY11973 | Canola | nucleus | 78.43 | 79.16 |
| CDY11974 | Canola | cytosol, nucleus, plastid | 33.44 | 74.83 |
| KRH75103 | Soybean | nucleus | 20.8 | 56.25 |
| VIT_19s0015g00740.t01 | Wine grape | nucleus | 56.09 | 56.0 |
| KRG98464 | Soybean | mitochondrion | 55.32 | 54.98 |
| KRH46399 | Soybean | cytosol | 54.7 | 54.36 |
| Solyc07g065680.2.1 | Tomato | nucleus | 56.39 | 54.22 |
| PGSC0003DMT400057359 | Potato | nucleus | 56.09 | 53.93 |
| GSMUA_Achr4P18510_001 | Banana | nucleus | 45.45 | 48.12 |
| GSMUA_Achr7P16580_001 | Banana | cytosol | 45.3 | 47.73 |
| KRH73920 | Soybean | nucleus | 47.46 | 47.46 |
| Os12t0271600-01 | Rice | plasma membrane | 47.3 | 47.45 |
| OQU79020 | Sorghum | nucleus | 46.23 | 46.08 |
| Zm00001d041088_P004 | Maize | nucleus | 46.07 | 46.07 |
| TraesCS4B01G127500.1 | Wheat | nucleus | 44.53 | 45.58 |
| TraesCS4D01G125200.1 | Wheat | nucleus | 44.38 | 45.43 |
| TraesCS4A01G188200.1 | Wheat | nucleus | 44.38 | 45.28 |
| Zm00001d023629_P001 | Maize | nucleus | 44.99 | 44.79 |
| TraesCS5B01G103500.1 | Wheat | nucleus | 43.91 | 44.6 |
| TraesCS5A01G098800.2 | Wheat | cytosol | 43.76 | 44.44 |
| HORVU5Hr1G029890.1 | Barley | nucleus | 43.91 | 44.19 |
| TraesCS5D01G110400.2 | Wheat | cytosol | 42.84 | 43.51 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.29 | 38.23 |
| AT1G12150.2 | Thale cress | cytosol | 30.97 | 36.68 |
| AT4G17210.1 | Thale cress | cytosol, plastid | 23.42 | 28.84 |
| AT2G26570.1 | Thale cress | nucleus | 25.73 | 20.69 |
| AT4G33390.1 | Thale cress | nucleus | 23.57 | 19.64 |
| AT5G42880.1 | Thale cress | nucleus | 22.19 | 19.17 |
| AT1G45545.2 | Thale cress | nucleus | 20.8 | 17.93 |
Protein Annotations
| MapMan:35.1 | EntrezGene:835681 | ProteinID:AED96692.1 | ArrayExpress:AT5G55860 | EnsemblPlantsGene:AT5G55860 | RefSeq:AT5G55860 |
| TAIR:AT5G55860 | RefSeq:AT5G55860-TAIR-G | EnsemblPlants:AT5G55860.1 | TAIR:AT5G55860.1 | EMBL:AY735732 | Unigene:At.51096 |
| ProteinID:BAA97285.1 | ncoils:Coil | EMBL:DQ056724 | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009903 |
| GO:GO:0009904 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | RefSeq:NP_200397.1 | PFAM:PF05701 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| PANTHER:PTHR32054 | PANTHER:PTHR32054:SF3 | UniProt:Q9LVQ4 | UniParc:UPI00000A1F9F | InterPro:Web | SEG:seg |
Description
WEB family protein At5g55860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ4]
Coordinates
chr5:+:22609433..22612486
Molecular Weight (calculated)
72434.6 Da
IEP (calculated)
5.167
GRAVY (calculated)
-0.777
Length
649 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAKKGRRDS SDSSPIVEVG EIDTSAPFQS VKDAVNLFGE AAFSAEKPVF RKPNPQSAEK VLVKQTELHL AQKELNKLKE QLKNAETIRE QALSELEWSK
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.