Factsheet for TraesCS4A01G188200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G125200.1	Wheat	nucleus	98.58	98.9
TraesCS4B01G127500.1	Wheat	nucleus	97.8	98.11
TraesCS5A01G098800.2	Wheat	cytosol	70.6	70.27
GSMUA_Achr4P18510_001	Banana	nucleus	54.56	56.61
GSMUA_Achr7P16580_001	Banana	cytosol	52.2	53.9
VIT_19s0015g00740.t01	Wine grape	nucleus	49.84	48.77
KRG98464	Soybean	mitochondrion	49.69	48.39
KRH46399	Soybean	cytosol	49.21	47.93
Solyc07g065680.2.1	Tomato	nucleus	49.84	46.96
GSMUA_AchrUn_...	Banana	nucleus	46.23	46.45
PGSC0003DMT400057359	Potato	nucleus	49.06	46.22
AT5G55860.1	Thale cress	nucleus	45.28	44.38
KRH75103	Soybean	nucleus	16.67	44.17
CDY17364	Canola	nucleus	44.5	43.34
CDY28631	Canola	nucleus	44.34	43.25
Bra002870.1-P	Field mustard	nucleus	44.34	43.19
Bra028956.1-P	Field mustard	nucleus	42.92	42.39
CDY11973	Canola	nucleus	42.77	42.3
KRH73920	Soybean	nucleus	43.08	42.22
CDY36768	Canola	nucleus	42.61	42.02
CDY11974	Canola	cytosol, nucleus, plastid	18.24	40.0
KRH51206	Soybean	cytosol	34.59	40.0
AT1G12150.2	Thale cress	cytosol	33.33	38.69
KRH36620	Soybean	cytosol, mitochondrion, nucleus	35.06	38.65
KRH11615	Soybean	cytosol, mitochondrion, nucleus	34.59	38.19
KRH01945	Soybean	cytosol, mitochondrion, nucleus	34.12	37.8
Bra016786.1-P	Field mustard	cytosol	32.23	37.48
CDY31245	Canola	cytosol	32.23	37.41
CDY21038	Canola	cytosol	32.08	37.29
PGSC0003DMT400050839	Potato	nucleus	35.38	36.23
PGSC0003DMT400034621	Potato	mitochondrion, plastid	25.31	35.7
Solyc04g015110.2.1	Tomato	plastid	34.75	35.47
CDY42964	Canola	cytosol	25.79	31.54
Bra026233.1-P	Field mustard	cytosol	25.79	31.48
CDY35594	Canola	nucleus	25.47	30.98
CDX90485	Canola	cytosol	25.79	30.94
CDY09639	Canola	cytosol	25.47	30.51
AT4G17210.1	Thale cress	cytosol, plastid	25.16	30.36
CDY58167	Canola	cytosol	24.69	30.19
CDY50127	Canola	cytosol	24.53	29.83
Bra021064.1-P	Field mustard	cytosol	24.37	29.75
CDY15972	Canola	cytosol	31.92	22.63
Bra026987.1-P	Field mustard	cytosol	33.02	20.81
CDY26542	Canola	cytosol	32.7	20.61
TraesCS2A01G166400.1	Wheat	cytosol	25.16	20.18
TraesCS1A01G248800.1	Wheat	nucleus	22.96	18.72
TraesCS5A01G238500.1	Wheat	cytosol	21.07	16.96

Protein Annotations

EnsemblPlants:TraesCS4A01G188200.1	EnsemblPlantsGene:TraesCS4A01G188200	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF3
PFAM:PF05701	SEG:seg	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4A:+:467142674..467145702

Molecular Weight (calculated)

70135.0 Da

IEP (calculated)

4.969

GRAVY (calculated)

-0.754

Length

636 amino acids

Sequence
(BLAST)

001: MGTPHADSEK TEIGEIDTRA PFESVKAAVS LFGEVRFSSE RSATRKAQAP QAERVLAKET ELHLAQKELD KYKEQLSNAE TTRLQALSEL ERAKKSVVDL
101: TNKLDAVNKS KELNIRVTEN ANIRTKELEG GSSSEAVGKD GPLKQELDNA REQYAIALAD LDAAKQELRK MRKDFETSLD AKLLAAQQEA ESVQSSESNK
201: EKASQLRTEI AMVQESLMHA KAATEQAREE EANILAEKDV ARRTCKESLE EAQRKLSNLR NDFDPVAFKG LQEKLDETYS EIASLQKKIE DARDRDLESV
301: SAVSTELDDA KETLQKVAQE QTSLSSLVES LRLELQAVKE EHSQLKHKDA EIESIVGDLH VKLQKCKSDL ETAVATESDA TLASDDLMLA LEQLSSESKN
401: ALQEAEVMQK RAAELREEAE AARASLVEAE QKLQSSLKEA EVAKAAETRA LDQIKQLSEK ASAVRASISE PGANITISKE EFESLSRKVE QTEKLAEMKV
501: AAAMAQVDAV RASENEAIKK LEAARKEMED MELATEEALK KAETAEAANK AVESELKRWR EKEEQNKNAE TYVPPVGATS LADAPSHKAS AAKANEKSNG
601: HQKNSKAVLR KSFMLPSITG MFHHKKKNNA DGSSHS

Best Arabidopsis Sequence Match ( AT5G55860.1 )
(BLAST)

001: MVAKKGRRDS SDSSPIVEVG EIDTSAPFQS VKDAVNLFGE AAFSAEKPVF RKPNPQSAEK VLVKQTELHL AQKELNKLKE QLKNAETIRE QALSELEWSK
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF

Arabidopsis Description

WEB family protein At5g55860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.