Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G248300.1 | Wheat | nucleus, plastid | 80.26 | 87.31 |
| TraesCS1B01G259500.1 | Wheat | nucleus | 84.1 | 85.86 |
| HORVU1Hr1G062330.8 | Barley | nucleus | 83.46 | 72.01 |
| Os03t0395300-01 | Rice | plasma membrane | 59.23 | 59.54 |
| EER92167 | Sorghum | nucleus | 58.85 | 58.55 |
| Zm00001d029420_P002 | Maize | nucleus | 58.59 | 58.29 |
| Zm00001d047240_P002 | Maize | nucleus | 56.41 | 56.05 |
| Bra034308.1-P | Field mustard | nucleus | 39.23 | 47.3 |
| Solyc05g042150.1.1 | Tomato | cytosol | 11.54 | 46.88 |
| TraesCS2A01G166400.1 | Wheat | cytosol | 47.05 | 46.28 |
| Solyc04g078950.1.1 | Tomato | nucleus | 17.69 | 45.25 |
| Solyc07g026880.1.1 | Tomato | cytosol | 8.59 | 43.51 |
| CDY48180 | Canola | nucleus | 41.03 | 43.36 |
| CDX77048 | Canola | nucleus | 41.41 | 42.67 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 44.36 | 41.0 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 46.03 | 40.94 |
| AT2G26570.1 | Thale cress | nucleus | 41.41 | 40.02 |
| Bra041137.1-P | Field mustard | nucleus | 28.72 | 39.93 |
| AT4G33390.1 | Thale cress | nucleus | 39.74 | 39.79 |
| CDY46119 | Canola | nucleus | 34.62 | 39.76 |
| CDX72400 | Canola | nucleus | 34.62 | 39.71 |
| Solyc07g022910.2.1 | Tomato | plastid | 42.69 | 39.32 |
| KRH07566 | Soybean | nucleus | 30.51 | 38.7 |
| PGSC0003DMT400039921 | Potato | nucleus | 42.18 | 38.43 |
| GSMUA_Achr10P... | Banana | cytosol | 40.13 | 38.4 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 39.49 | 38.21 |
| Solyc12g088830.1.1 | Tomato | nucleus | 40.64 | 37.6 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 39.23 | 37.32 |
| PGSC0003DMT400011385 | Potato | nucleus | 42.69 | 36.88 |
| KRH45361 | Soybean | nucleus | 27.56 | 36.69 |
| Bra033647.1-P | Field mustard | nucleus | 33.59 | 36.34 |
| CDY22380 | Canola | nucleus | 33.21 | 36.02 |
| CDX71526 | Canola | nucleus | 32.44 | 34.94 |
| PGSC0003DMT400020677 | Potato | nucleus | 42.56 | 34.23 |
| AT5G42880.1 | Thale cress | nucleus | 32.69 | 33.95 |
| AT1G45545.2 | Thale cress | nucleus | 32.69 | 33.86 |
| Solyc08g015840.1.1 | Tomato | cytosol | 8.46 | 33.67 |
| CDY17054 | Canola | nucleus | 30.51 | 33.52 |
| KRH51982 | Soybean | nucleus | 40.64 | 33.26 |
| CDY43212 | Canola | nucleus | 30.13 | 32.91 |
| Bra014049.1-P | Field mustard | nucleus | 31.79 | 32.89 |
| CDY17108 | Canola | nucleus | 30.64 | 32.69 |
| Bra040259.1-P | Field mustard | nucleus | 30.64 | 32.65 |
| KRH61284 | Soybean | nucleus | 40.51 | 32.48 |
| CDY62582 | Canola | nucleus | 30.0 | 31.97 |
| TraesCS5A01G238500.1 | Wheat | cytosol | 30.9 | 30.51 |
| KRH15355 | Soybean | nucleus | 39.1 | 30.2 |
| TraesCS5A01G098800.2 | Wheat | cytosol | 19.87 | 24.26 |
| TraesCS4A01G188200.1 | Wheat | nucleus | 18.72 | 22.96 |
Protein Annotations
| EnsemblPlants:TraesCS1A01G248800.1 | EnsemblPlantsGene:TraesCS1A01G248800 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF2 |
| PFAM:PF05701 | SEG:seg | MapMan:20.5.8.1 | : | : | : |
Description
No Description!
Coordinates
chr1A:-:440886658..440889301
Molecular Weight (calculated)
86168.5 Da
IEP (calculated)
5.307
GRAVY (calculated)
-0.775
Length
780 amino acids
Sequence
(BLAST)
(BLAST)
001: METPDSTHHS VASVQDAGEP APVLAENPDP SLEIQEKLPH NLTGHKENLT EHHIGHSVPA SPEMFPRSVP AQVSNNSLTE KTDDATSTNN SEKVNNIPHN
101: GSCSDSTMVT SESKSNGHNP DHRANIAATP NKGAETESRP YKGLVDTAAP FESVKDAVTK FGGIVDWKAY RTHTLERRGA MQLELEKVKQ DIPQVKGSSE
201: TAEMARSQVV EELETTKRLV EELKHKLERA EVELEQSKQD SELAQLRAQE MERGIDNGAS VVAQTELAVA KERHQKAIEE LKMVKEGLGS TQEQYTTLVT
301: ERDAATKRAE EAASAAKETE KRVEELTLEL FASRESLELA HAAHHDAEEH RLGAALAKEQ DCLAWERELQ QAKEELRQLD EQILSKTSAQ SKLDGNKGIF
401: LRLSADLAAY MANKSSEEDG AVEEHGSEED REMSRSIKQA LASARVELED VRGNIAKAND EANLIRAVAE SLRTELDKEK ASLVTLQQRE SMASITLSSL
501: EAELSRTKQE IEMAYTKEAE SRAKMADIPK MLQRAAQEAD DAKVAAHSAR EDLRKSKEET EQAKAAATTA EVRLRAALKE IEASKASERL ALVAAQALQE
601: SEEATSSEDS PRVTLPLGEY HLLSKRVHEA EELASERVAA SLAQIELAKE SESRSLDRLL EVSRSMDQKK DALKIASQRA AMAEEGKLGA EAQLRKWRSE
701: HKQLRKAHEA AKHATSPLST PFAGYKEASY QENKEVLTQP ISYMSDNSMG GFVSDKKLRK KKSFFPQMSS VFSRKVQTQT
101: GSCSDSTMVT SESKSNGHNP DHRANIAATP NKGAETESRP YKGLVDTAAP FESVKDAVTK FGGIVDWKAY RTHTLERRGA MQLELEKVKQ DIPQVKGSSE
201: TAEMARSQVV EELETTKRLV EELKHKLERA EVELEQSKQD SELAQLRAQE MERGIDNGAS VVAQTELAVA KERHQKAIEE LKMVKEGLGS TQEQYTTLVT
301: ERDAATKRAE EAASAAKETE KRVEELTLEL FASRESLELA HAAHHDAEEH RLGAALAKEQ DCLAWERELQ QAKEELRQLD EQILSKTSAQ SKLDGNKGIF
401: LRLSADLAAY MANKSSEEDG AVEEHGSEED REMSRSIKQA LASARVELED VRGNIAKAND EANLIRAVAE SLRTELDKEK ASLVTLQQRE SMASITLSSL
501: EAELSRTKQE IEMAYTKEAE SRAKMADIPK MLQRAAQEAD DAKVAAHSAR EDLRKSKEET EQAKAAATTA EVRLRAALKE IEASKASERL ALVAAQALQE
601: SEEATSSEDS PRVTLPLGEY HLLSKRVHEA EELASERVAA SLAQIELAKE SESRSLDRLL EVSRSMDQKK DALKIASQRA AMAEEGKLGA EAQLRKWRSE
701: HKQLRKAHEA AKHATSPLST PFAGYKEASY QENKEVLTQP ISYMSDNSMG GFVSDKKLRK KKSFFPQMSS VFSRKVQTQT
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.