Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400011385 | |
| PGSC0003DMT400020677 | |
| PGSC0003DMT400039921 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26570.1 | PGSC0003DMT400011385 | AT2G26570.1 | 20974974 |
| AT2G26570.1 | PGSC0003DMT400020677 | AT2G26570.1 | 20974974 |
| AT2G26570.1 | PGSC0003DMT400039921 | AT2G26570.1 | 20974974 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g022910.2.1 | Tomato | plastid | 72.09 | 76.86 |
| Bra034308.1-P | Field mustard | nucleus | 44.74 | 62.44 |
| CDY48180 | Canola | nucleus | 46.62 | 57.05 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 52.27 | 55.92 |
| PGSC0003DMT400039921 | Potato | nucleus | 52.93 | 55.84 |
| CDX77048 | Canola | nucleus | 46.29 | 55.22 |
| AT2G26570.1 | Thale cress | nucleus | 48.62 | 54.4 |
| AT4G33390.1 | Thale cress | nucleus | 44.52 | 51.6 |
| Bra041137.1-P | Field mustard | nucleus | 31.89 | 51.34 |
| PGSC0003DMT400020677 | Potato | nucleus | 55.04 | 51.24 |
| CDY46119 | Canola | nucleus | 37.98 | 50.52 |
| CDX72400 | Canola | nucleus | 37.87 | 50.29 |
| KRH07566 | Soybean | nucleus | 34.22 | 50.24 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 43.08 | 48.26 |
| KRH45361 | Soybean | nucleus | 30.23 | 46.59 |
| TraesCS1D01G248300.1 | Wheat | nucleus, plastid | 36.77 | 46.3 |
| CDX71526 | Canola | nucleus | 36.99 | 46.13 |
| CDY22380 | Canola | nucleus | 36.43 | 45.76 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 44.19 | 45.5 |
| Bra033647.1-P | Field mustard | nucleus | 36.32 | 45.49 |
| Os03t0395300-01 | Rice | plasma membrane | 38.87 | 45.23 |
| HORVU2Hr1G030630.1 | Barley | nucleus | 39.42 | 44.89 |
| KRH51982 | Soybean | nucleus | 47.29 | 44.81 |
| KRH61284 | Soybean | nucleus | 47.95 | 44.5 |
| TraesCS2A01G166400.1 | Wheat | cytosol | 38.98 | 44.39 |
| TraesCS1B01G259500.1 | Wheat | nucleus | 36.77 | 43.46 |
| TraesCS2B01G192300.1 | Wheat | nucleus | 40.31 | 43.28 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 38.98 | 42.93 |
| KRH15355 | Soybean | nucleus | 47.95 | 42.87 |
| Zm00001d029420_P002 | Maize | nucleus | 37.1 | 42.73 |
| TraesCS1A01G248800.1 | Wheat | nucleus | 36.88 | 42.69 |
| TraesCS2D01G173700.1 | Wheat | nucleus | 39.76 | 42.69 |
| GSMUA_Achr10P... | Banana | cytosol | 38.43 | 42.58 |
| CDY17108 | Canola | nucleus | 34.44 | 42.54 |
| AT5G42880.1 | Thale cress | nucleus | 35.33 | 42.48 |
| AT1G45545.2 | Thale cress | nucleus | 35.33 | 42.36 |
| Bra040259.1-P | Field mustard | nucleus | 34.33 | 42.35 |
| KXG36701 | Sorghum | nucleus | 38.65 | 42.3 |
| CDY43212 | Canola | nucleus | 33.44 | 42.3 |
| Zm00001d047240_P002 | Maize | nucleus | 36.77 | 42.29 |
| CDY17054 | Canola | nucleus | 33.22 | 42.25 |
| GSMUA_Achr9P27100_001 | Banana | nucleus | 38.43 | 42.21 |
| Zm00001d022161_P001 | Maize | nucleus | 37.21 | 42.0 |
| CDY62582 | Canola | nucleus | 33.78 | 41.67 |
| Bra014049.1-P | Field mustard | nucleus | 34.77 | 41.64 |
| EER92167 | Sorghum | nucleus | 36.1 | 41.58 |
| Os07t0619100-01 | Rice | plasma membrane | 36.99 | 40.88 |
| GSMUA_Achr5P24580_001 | Banana | cytosol | 27.57 | 39.65 |
| Os06t0314000-01 | Rice | cytosol, nucleus | 21.93 | 39.13 |
| HORVU1Hr1G062330.8 | Barley | nucleus | 37.87 | 37.83 |
| TraesCS4B01G300400.1 | Wheat | nucleus | 31.45 | 32.83 |
| PGSC0003DMT400050839 | Potato | nucleus | 16.61 | 24.15 |
| PGSC0003DMT400034621 | Potato | mitochondrion, plastid | 11.74 | 23.5 |
| PGSC0003DMT400057359 | Potato | nucleus | 17.39 | 23.26 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400011385 | EnsemblPlantsGene:PGSC0003DMG400004459 | EntrezGene:102590069 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 |
| PANTHER:PTHR32054:SF2 | PFAM:PF05701 | PGSC:PGSC0003DMG400004459 | RefSeq:XP_006343438.1 | RefSeq:XP_015162441.1 | SEG:seg |
| UniParc:UPI000294E1BD | UniProt:M0ZZH7 | MapMan:20.5.8.1 | : | : | : |
Description
Paramyosin [Source:PGSC_GENE;Acc:PGSC0003DMG400004459]
Coordinates
chr7:+:31599864..31603384
Molecular Weight (calculated)
99666.8 Da
IEP (calculated)
5.162
GRAVY (calculated)
-0.775
Length
903 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDAKDVKGS SPQECAPKPE VSVPKEDHSH SATPTRQHMN ETANSEIQEP SIKSDGAGDI SKTGSVQSAV PTVQQEASPK LVEDLKSLEP PTALSEASSS
101: SILDAKASDS LQQSSDGGCG GGLLNQPNHT TDGPTEEHDA SPLLTMNSNP ASLKEENQKE SSDHIQSDPL KGEKNNVSLL QQDYSPSISH VSAETTSSST
201: QEQKHKYNIH VEVPNTGQSL TKASCLTVKI PEPSANSKHP NNSVINRVKI DTAAPIESVK QAVSKFGGIV DWKAHRVQTV ERRKVVDQEL ANVQEEIPLY
301: KKQSQAAEGA KMMVLKELDS TKRLIEELKL NLERAQTEEQ QAKQDSELAK LRVEEMEQGI ADEASIAAKA QLEVAKARHE AAVSELNTVD YELKDLHKEY
401: DLLVSERYDA VQKAEEAVSA SKKVEKEVEY LTIELITTKE SLEAAQAAHL EVEEHRIGAA MAREQDTLTW EKELKQAEDE LEKLNQQILS SKDLKAKLDT
501: ASALLLDLKA EFAAYMESKL KQETVEDGNF GELSEPEKRT HAKIQAAVAL ATRELEEVKL NIEKATDDVN CLKVAATSLK AELDKEKSEL ASIQQREGMA
601: SIAVASLEAE LNRTKSEIAL VQMKEKEARE KVVELPKKLQ EAAQEADRAK SLAQTAREEL RKAKEEAEQA KAGASTMESR LIAANKEIEA AKASEKLALE
701: AINALQESEL ARSTNDEDSP SGVTLSLEEY YDLSKLAHEA EEQANKRVAA AITQIEVFKE SELRSLSRLE EVNREMTTRK EALEIAMKKA EKAKEGKLAV
801: EQELRKWRAE HGQRRKAGES LPLINTTRSP RTSFEESKAS KTYERAPEAA SLHHRSSPRA YERGSNTETD TSPELKIPKK KKRSFFPRLL MLLGRKKSQA
901: KTA
101: SILDAKASDS LQQSSDGGCG GGLLNQPNHT TDGPTEEHDA SPLLTMNSNP ASLKEENQKE SSDHIQSDPL KGEKNNVSLL QQDYSPSISH VSAETTSSST
201: QEQKHKYNIH VEVPNTGQSL TKASCLTVKI PEPSANSKHP NNSVINRVKI DTAAPIESVK QAVSKFGGIV DWKAHRVQTV ERRKVVDQEL ANVQEEIPLY
301: KKQSQAAEGA KMMVLKELDS TKRLIEELKL NLERAQTEEQ QAKQDSELAK LRVEEMEQGI ADEASIAAKA QLEVAKARHE AAVSELNTVD YELKDLHKEY
401: DLLVSERYDA VQKAEEAVSA SKKVEKEVEY LTIELITTKE SLEAAQAAHL EVEEHRIGAA MAREQDTLTW EKELKQAEDE LEKLNQQILS SKDLKAKLDT
501: ASALLLDLKA EFAAYMESKL KQETVEDGNF GELSEPEKRT HAKIQAAVAL ATRELEEVKL NIEKATDDVN CLKVAATSLK AELDKEKSEL ASIQQREGMA
601: SIAVASLEAE LNRTKSEIAL VQMKEKEARE KVVELPKKLQ EAAQEADRAK SLAQTAREEL RKAKEEAEQA KAGASTMESR LIAANKEIEA AKASEKLALE
701: AINALQESEL ARSTNDEDSP SGVTLSLEEY YDLSKLAHEA EEQANKRVAA AITQIEVFKE SELRSLSRLE EVNREMTTRK EALEIAMKKA EKAKEGKLAV
801: EQELRKWRAE HGQRRKAGES LPLINTTRSP RTSFEESKAS KTYERAPEAA SLHHRSSPRA YERGSNTETD TSPELKIPKK KKRSFFPRLL MLLGRKKSQA
901: KTA
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.