Factsheet for GSMUA_Achr5P17590_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr5P17590_001
GSMUA_Achr5P24580_001
GSMUA_Achr6P10120_001
GSMUA_Achr9P27100_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	GSMUA_Achr10P...	AT2G26570.1	20974974
AT2G26570.1	GSMUA_Achr5P17590_001	AT2G26570.1	20974974
AT2G26570.1	GSMUA_Achr5P24580_001	AT2G26570.1	20974974
AT2G26570.1	GSMUA_Achr6P10120_001	AT2G26570.1	20974974
AT2G26570.1	GSMUA_Achr9P27100_001	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g026880.1.1	Tomato	cytosol	10.24	54.55
Solyc05g042150.1.1	Tomato	cytosol	12.44	53.12
Solyc04g078950.1.1	Tomato	nucleus	18.66	50.16
Bra034308.1-P	Field mustard	nucleus	38.78	49.15
GSMUA_Achr6P10120_001	Banana	nucleus	47.8	44.7
CDY48180	Canola	nucleus	40.12	44.58
GSMUA_Achr10P...	Banana	cytosol	44.27	44.54
CDX77048	Canola	nucleus	40.49	43.86
TraesCS1D01G248300.1	Wheat	nucleus, plastid	37.8	43.24
AT2G26570.1	Thale cress	nucleus	42.2	42.87
VIT_18s0001g10560.t01	Wine grape	nucleus	43.78	42.54
HORVU2Hr1G030630.1	Barley	nucleus	40.61	41.99
Bra041137.1-P	Field mustard	nucleus	28.66	41.89
Os03t0395300-01	Rice	plasma membrane	39.27	41.49
AT4G33390.1	Thale cress	nucleus	39.39	41.46
Solyc07g022910.2.1	Tomato	plastid	42.56	41.2
TraesCS2A01G166400.1	Wheat	cytosol	39.76	41.11
CDY46119	Canola	nucleus	33.9	40.94
CDX72400	Canola	nucleus	33.78	40.74
CDX68971	Canola	mitochondrion, nucleus, plastid	40.0	40.69
TraesCS1B01G259500.1	Wheat	nucleus	37.68	40.45
KXG36701	Sorghum	nucleus	40.61	40.36
Zm00001d022161_P001	Maize	nucleus	39.15	40.12
KRH07566	Soybean	nucleus	30.0	40.0
Solyc12g088830.1.1	Tomato	nucleus	40.98	39.86
PGSC0003DMT400039921	Potato	nucleus	41.1	39.37
TraesCS2B01G192300.1	Wheat	nucleus	40.37	39.36
TraesCS1A01G248800.1	Wheat	nucleus	37.32	39.23
Zm00001d029420_P002	Maize	nucleus	37.44	39.16
PGSC0003DMT400011385	Potato	nucleus	42.93	38.98
KRH45361	Soybean	nucleus	27.8	38.91
EER92167	Sorghum	nucleus	37.2	38.9
Zm00001d047240_P002	Maize	nucleus	37.2	38.85
TraesCS2D01G173700.1	Wheat	nucleus	39.51	38.53
Os07t0619100-01	Rice	plasma membrane	38.29	38.43
CDY22380	Canola	nucleus	33.17	37.83
GSMUA_Achr9P27100_001	Banana	nucleus	37.8	37.71
CDX71526	Canola	nucleus	33.29	37.71
Bra033647.1-P	Field mustard	nucleus	32.8	37.31
Solyc08g015840.1.1	Tomato	cytosol	8.9	37.24
PGSC0003DMT400020677	Potato	nucleus	42.44	35.88
Os06t0314000-01	Rice	cytosol, nucleus	21.95	35.57
AT5G42880.1	Thale cress	nucleus	32.56	35.55
HORVU1Hr1G062330.8	Barley	nucleus	38.9	35.29
KRH61284	Soybean	nucleus	41.34	34.84
KRH51982	Soybean	nucleus	40.37	34.73
AT1G45545.2	Thale cress	nucleus	31.83	34.66
GSMUA_Achr5P24580_001	Banana	cytosol	26.22	34.24
CDY43212	Canola	nucleus	29.76	34.17
CDY17108	Canola	nucleus	30.24	33.93
Bra040259.1-P	Field mustard	nucleus	29.88	33.47
Bra014049.1-P	Field mustard	nucleus	30.61	33.29
CDY17054	Canola	nucleus	28.66	33.1
CDY62582	Canola	nucleus	29.39	32.92
KRH15355	Soybean	nucleus	40.12	32.57
TraesCS4B01G300400.1	Wheat	nucleus	31.22	29.6
GSMUA_Achr4P18510_001	Banana	nucleus	17.2	23.0
GSMUA_Achr7P16580_001	Banana	cytosol	16.22	21.59
GSMUA_AchrUn_...	Banana	nucleus	15.37	19.91

Protein Annotations

EnsemblPlants:GSMUA_Achr5P17590_001	EnsemblPlants:GSMUA_Achr5T17590_001	EnsemblPlantsGene:GSMUA_Achr5G17590_001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054
PANTHER:PTHR32054:SF2	PFAM:PF05701	SEG:seg	UniParc:UPI0002969E06	UniProt:M0SZD8	MapMan:35.1

Description

paramyosin, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr5G17590_001]

Coordinates

chr5:-:18137902..18140882

Molecular Weight (calculated)

91844.1 Da

IEP (calculated)

5.295

GRAVY (calculated)

-0.797

Length

820 amino acids

Sequence
(BLAST)

001: MHAFETKNEQ YLSDPSPLDN YIPMSEYINT NSKQEGAVED SVSSVQQNLL DITSQHVAIA ENFDSHHQQQ TVVEESEPLV LQDIPDASTM DKNKPNTMES
101: LNISGTPTDD AVVVLPETVT YLPSHSLDAS KAELENISKH ENETFVKVDP IQISNDSSAS TETRNTEGRP SLQPSDLSHI QVLRHTQKKT PESTKSSIHR
201: KDDNANRGFV DTAAPIESVK EVVTKFGGII DWKAHKAHNL EKQKHVQSEL EKIREEIPEC KRQSEASEEA KIQVLKELES MKRIIEELKL NLDRARKEEA
301: QAKQDSELAQ LRVKELEQGI ANESSIVAKT QLEVAKERHE AAVAELKSVK DDLQALQREY DSLISERDIA MRKAEKAVSS AKDIEKTVEE LTLELIAKKE
401: SLESAHVAHL EAEEHRIGAA LARDQDCFTW AKELKQAEEE VQQLNQQLTL TKDLKLKLDA SCTLLQTFKA ELEAYMKAKL KQESESTDNE KIPDDVEETK
501: GTTSSIQAID STRKALEEVK ASIEKAKDEV NCLISSLEAE LDRTRQELEV VRMKEKEARE KMVELPKLMQ QAAQEADQAK SVAQMARDEL RKAKEEAEQA
601: KAASSTTQIK LHAVLKETEA AKASEKLAMA RVKALQESEQ AAGMGGADSP AGVTLPLDEY STLCKTAHEA EELAHERVAA ALAQIEVAKK SERSSIERLE
701: QTYREMEQCK QALRVAIEKA EKAKEGKLGA EQELRKWRAE LKQRRRATDA AKGTINPPLR SFEQSSEPKS SSKEATDVHV HPEPENAEHD APARNKTKKK
801: KPLFPRIVLF LARKKPQPVK

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.