Factsheet for Zm00001d022161_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
plastid 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d022161_P001
Zm00001d029420_P002
Zm00001d047240_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	Zm00001d022161_P001	AT2G26570.1	20974974
AT2G26570.1	Zm00001d029420_P002	AT2G26570.1	20974974
AT2G26570.1	Zm00001d047240_P002	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG36701	Sorghum	nucleus	74.0	71.76
Os07t0619100-01	Rice	plasma membrane	60.25	59.0
TraesCS2A01G166400.1	Wheat	cytosol	55.25	55.74
HORVU2Hr1G030630.1	Barley	nucleus	55.12	55.61
TraesCS2D01G173700.1	Wheat	nucleus	55.5	52.79
TraesCS2B01G192300.1	Wheat	nucleus	55.12	52.44
Zm00001d029420_P002	Maize	nucleus	50.75	51.79
Solyc05g042150.1.1	Tomato	cytosol	12.0	50.0
Zm00001d047240_P002	Maize	nucleus	48.38	49.3
Solyc07g026880.1.1	Tomato	cytosol	9.38	48.7
Bra034308.1-P	Field mustard	nucleus	37.88	46.83
Solyc04g078950.1.1	Tomato	nucleus	17.12	44.92
CDY48180	Canola	nucleus	40.12	43.5
CDX77048	Canola	nucleus	39.25	41.48
AT4G33390.1	Thale cress	nucleus	40.12	41.21
VIT_18s0001g10560.t01	Wine grape	nucleus	43.38	41.11
CDX72400	Canola	nucleus	34.75	40.88
Bra041137.1-P	Field mustard	nucleus	28.38	40.46
CDY46119	Canola	nucleus	34.25	40.35
GSMUA_Achr6P10120_001	Banana	nucleus	43.88	40.02
AT2G26570.1	Thale cress	nucleus	40.25	39.9
Solyc07g022910.2.1	Tomato	plastid	41.75	39.43
GSMUA_Achr5P17590_001	Banana	nucleus	40.12	39.15
PGSC0003DMT400039921	Potato	nucleus	41.25	38.55
Solyc12g088830.1.1	Tomato	nucleus	40.25	38.2
KRH07566	Soybean	nucleus	29.0	37.72
CDX68971	Canola	mitochondrion, nucleus, plastid	37.88	37.59
Solyc08g015840.1.1	Tomato	cytosol	9.12	37.24
PGSC0003DMT400011385	Potato	nucleus	42.0	37.21
GSMUA_Achr10P...	Banana	cytosol	37.62	36.93
KRH45361	Soybean	nucleus	26.75	36.52
Bra033647.1-P	Field mustard	nucleus	32.88	36.48
CDY22380	Canola	nucleus	32.75	36.44
CDX71526	Canola	nucleus	31.75	35.08
KRH51982	Soybean	nucleus	40.75	34.21
AT1G45545.2	Thale cress	nucleus	32.12	34.13
PGSC0003DMT400020677	Potato	nucleus	41.38	34.12
AT5G42880.1	Thale cress	nucleus	32.0	34.09
CDY17108	Canola	nucleus	30.25	33.11
CDY17054	Canola	nucleus	29.38	33.1
Bra040259.1-P	Field mustard	nucleus	30.12	32.92
KRH61284	Soybean	nucleus	40.0	32.89
CDY43212	Canola	nucleus	29.25	32.77
Bra014049.1-P	Field mustard	nucleus	30.88	32.76
CDY62582	Canola	nucleus	29.75	32.51
KRH15355	Soybean	nucleus	40.88	32.38
Zm00001d048523_P001	Maize	nucleus	24.25	31.09
Zm00001d027322_P001	Maize	cytosol	26.88	30.54
Zm00001d005893_P001	Maize	cytosol	28.5	30.0
Zm00001d020719_P002	Maize	nucleus	29.38	29.86
Zm00001d023629_P001	Maize	nucleus	19.5	23.93
Zm00001d041088_P004	Maize	nucleus	19.0	23.42
Zm00001d014236_P001	Maize	nucleus	7.88	12.26

Protein Annotations

EnsemblPlants:Zm00001d022161_P001	EnsemblPlants:Zm00001d022161_T001	EnsemblPlantsGene:Zm00001d022161	EntrezGene:100304438	InterPro:Web	ncoils:Coil
PANTHER:PTHR32054	PANTHER:PTHR32054:SF16	PFAM:PF05701	ProteinID:ONM59699.1	SEG:seg	UniParc:UPI000221BC76
UniProt:A0A1D6IJT4	MapMan:20.5.8.1	:	:	:	:

Description

Putative paramyosin

Coordinates

chr7:+:171452423..171456738

Molecular Weight (calculated)

88489.9 Da

IEP (calculated)

4.771

GRAVY (calculated)

-0.774

Length

800 amino acids

Sequence
(BLAST)

001: MESSYATEES NSKGSSANAS SSPTGSSETS VDLQTPPAAK EIPGRIDHEG PSWHEVLEMR VPDLSEDIAE SHAPSDTDPD ILSNSGPTEA YISSTNDKAD
101: YPSSVGTSEV NGVPVNVSNG AGTTLKDEMK PKEDDTHHQI DRDTKLKMKQ DSATTPESPY RGLIDTAAPF ESVREAVTKF GGIVDWKAHK AQMMERRKLI
201: QVELENIRTE IPLCKEELEA AEMTKSQVVD ELEHTKRLIE ELKHQLEKVQ VEEAQAKQDS ELAQLRAQEI EHGVADEASA IARTQMEVAK ERHEKAVAEL
301: KSVKEELASV HEQYAALVDE RDTAIKRAEE VISAGKDIEK RVEQLTLELI ASKGSLELAH AAHHEAEERR IGAALAKEQD CNAWERELRQ AQEELERLDS
401: KLAFSNDMQH NIDANLHKLL SLNSELSAYV ANKLTEEAEG VSKDHESEDS RHISNAVKEA LASKQKELQE LKADIEKAKA EANVLRFAAM TLRSELDNEN
501: ASLVALQQGE AMASVAVSSL EAELNRTKQE IESVRSKEAE AQEKMVELPM VLQQATQEAE DARVAAHAAH EELRKAKEAF EQTKAAAAAA ETRLSAVVKE
601: TEASVASERL AREALQALQE SEQARETKDS QRGVVLPISE YYELSKRAHE AEEQASEKVA EALAQVVSAK ESEAMSLESL KEASDEMDEK KEALEIALER
701: AGRANEGKLG AEQELRKWRA DHEQRRRAHE SAKRAVNPLN GPSRVFVEQK SPYHKEQESK VQASGSSSYE GLVPNQKMQR KKSLFPLMGS VLSRKTRAQT

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.