Factsheet for TraesCS2D01G173700.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G248800.1
TraesCS1B01G259500.1
TraesCS1D01G248300.1
TraesCS2A01G166400.1
TraesCS2B01G192300.1
TraesCS2D01G173700.1
TraesCS4B01G300400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	TraesCS1A01G248800.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS1B01G259500.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS1D01G248300.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2A01G166400.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2B01G192300.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2D01G173700.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS4B01G300400.1	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G192300.1	Wheat	nucleus	90.73	90.73
TraesCS2A01G166400.1	Wheat	cytosol	81.93	86.89
HORVU2Hr1G030630.1	Barley	nucleus	80.5	85.37
Os07t0619100-01	Rice	plasma membrane	54.58	56.18
Zm00001d022161_P001	Maize	nucleus	52.79	55.5
KXG36701	Sorghum	nucleus	53.98	55.03
Solyc05g042150.1.1	Tomato	cytosol	11.89	52.08
Solyc07g026880.1.1	Tomato	cytosol	9.39	51.3
TraesCS1D01G248300.1	Wheat	nucleus, plastid	43.04	50.49
Bra034308.1-P	Field mustard	nucleus	37.69	49.0
Solyc04g078950.1.1	Tomato	nucleus	17.12	47.21
CDY48180	Canola	nucleus	39.36	44.85
CDX77048	Canola	nucleus	39.83	44.25
AT2G26570.1	Thale cress	nucleus	41.97	43.74
AT4G33390.1	Thale cress	nucleus	39.48	42.62
CDY46119	Canola	nucleus	34.24	42.42
VIT_18s0001g10560.t01	Wine grape	nucleus	42.33	42.18
GSMUA_Achr6P10120_001	Banana	nucleus	43.88	42.08
Bra041137.1-P	Field mustard	nucleus	27.71	41.53
Solyc07g022910.2.1	Tomato	plastid	41.26	40.97
PGSC0003DMT400039921	Potato	nucleus	41.62	40.89
CDX72400	Canola	nucleus	32.7	40.44
PGSC0003DMT400011385	Potato	nucleus	42.69	39.76
GSMUA_Achr5P17590_001	Banana	nucleus	38.53	39.51
CDX68971	Canola	mitochondrion, nucleus, plastid	37.69	39.33
Solyc12g088830.1.1	Tomato	nucleus	39.24	39.15
CDY22380	Canola	nucleus	33.29	38.94
KRH07566	Soybean	nucleus	28.42	38.86
Bra033647.1-P	Field mustard	nucleus	33.17	38.7
GSMUA_Achr10P...	Banana	cytosol	37.34	38.53
CDX71526	Canola	nucleus	32.58	37.85
KRH45361	Soybean	nucleus	26.16	37.54
Solyc08g015840.1.1	Tomato	cytosol	8.68	37.24
AT5G42880.1	Thale cress	nucleus	32.34	36.22
PGSC0003DMT400020677	Potato	nucleus	41.38	35.88
KRH51982	Soybean	nucleus	40.31	35.57
AT1G45545.2	Thale cress	nucleus	31.75	35.46
CDY43212	Canola	nucleus	29.49	34.73
CDY17054	Canola	nucleus	29.01	34.37
KRH61284	Soybean	nucleus	39.48	34.12
Bra014049.1-P	Field mustard	nucleus	30.44	33.95
KRH15355	Soybean	nucleus	39.71	33.07
Bra040259.1-P	Field mustard	nucleus	28.78	33.06
CDY62582	Canola	nucleus	28.66	32.92
CDY17108	Canola	nucleus	28.54	32.83
TraesCS5D01G245400.1	Wheat	cytosol	30.44	32.45
TraesCS5D01G110400.2	Wheat	cytosol	19.02	25.04
TraesCS4D01G125200.1	Wheat	nucleus	18.55	24.61

Protein Annotations

EnsemblPlants:TraesCS2D01G173700.1	EnsemblPlantsGene:TraesCS2D01G173700	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF16
PFAM:PF05701	SEG:seg	MapMan:20.5.8.1	:	:	:

Description

No Description!

Coordinates

chr2D:-:117226842..117229477

Molecular Weight (calculated)

93202.9 Da

IEP (calculated)

4.875

GRAVY (calculated)

-0.767

Length

841 amino acids

Sequence
(BLAST)

001: MESTHASEEN NLKESSPVEI PETYVDSPTL EVSSNGGHEN MNANMEKSAQ AATSGISNGL PVAAEGSENP DIFVDSPTLE VSNGDHKNID AHKEKSAQAA
101: TLDISNGLSV AADDSELSSH SQVLVKSHSD VAEHDVESNS PTGTGPEILS NSGPTETSKH SGKGQVDHSS SVYPVEVNHV EDKTRFQRKI AVKPKVIDDS
201: EAKPESPYKG LIDTAAPFES VREAVTKFGG IVDWKAHKVQ MMERRKFIQL ELENAQKEIP QCKEELEAAE MAKSRVLDEL ETTKRIIEEL KHELEKAQME
301: EVQAKQDSEL AQLRVQEIER GVADDSSVIA KTQMEVAKER HEKSVAELKS VKEELRTLHE EYATLVNERD RAIKRAEEVL AAGKDIEKRV EGLTVELIAA
401: KGSLELAHAA HHDAEERRIG TVLAKEQDCL AWDGELVQAQ EELQQLNNKL LSQNDLKKNL EANLRKLHGL KSELADYVES ILCKEALGVA KEHESEDARQ
501: ISSSIKETLA STQKELEEVK ANIENTKTEA KLLRVAATTL RSELDREKAS LDSLQQREVM ASIAVSSLEA ELNRTQKEIE SVRSKEEDAQ EKMVELPKML
601: QQAAQEAEDA KDAAQAAEEE LRKAKEDTEQ TKAAATTTSS RLCAVLKEIE ASKASERLAL AAVRALKESK EASNVEDSPR GVTLPISEYY ALSKKAQEAE
701: ELANEKVAEA LTQVESAKGS ELESLDRLTE AAKEMDEKKR TLELALERAE RANEGKLAAE QQLRKWRSDH EQRRKIQEAA KRAVNPVSSP FVDPYLKEQD
801: SRLHMSGSSY EDHVPNRKLR KKKSFLPRMG SFLSRNTPAQ T

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.