Factsheet for TraesCS4B01G300400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G248800.1
TraesCS1B01G259500.1
TraesCS1D01G248300.1
TraesCS2A01G166400.1
TraesCS2B01G192300.1
TraesCS2D01G173700.1
TraesCS4B01G300400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	TraesCS1A01G248800.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS1B01G259500.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS1D01G248300.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2A01G166400.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2B01G192300.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2D01G173700.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS4B01G300400.1	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0314000-01	Rice	cytosol, nucleus	32.49	55.53
Solyc04g078950.1.1	Tomato	nucleus	13.99	39.67
Bra034308.1-P	Field mustard	nucleus	29.25	39.1
Solyc07g026880.1.1	Tomato	cytosol	6.59	37.01
CDY48180	Canola	nucleus	29.94	35.09
CDX77048	Canola	nucleus	30.29	34.61
Solyc05g042150.1.1	Tomato	cytosol	7.63	34.38
TraesCS1B01G259500.1	Wheat	nucleus	30.17	34.16
AT2G26570.1	Thale cress	nucleus	31.45	33.71
Bra041137.1-P	Field mustard	nucleus	21.85	33.69
CDY46119	Canola	nucleus	26.36	33.58
GSMUA_Achr6P10120_001	Banana	nucleus	33.99	33.52
KRH07566	Soybean	nucleus	23.82	33.5
AT4G33390.1	Thale cress	nucleus	29.94	33.25
CDX72400	Canola	nucleus	25.9	32.94
VIT_18s0001g10560.t01	Wine grape	nucleus	31.79	32.58
Solyc07g022910.2.1	Tomato	plastid	31.79	32.47
KRH45361	Soybean	nucleus	21.85	32.25
TraesCS2B01G192300.1	Wheat	nucleus	31.33	32.22
PGSC0003DMT400039921	Potato	nucleus	31.21	31.54
PGSC0003DMT400011385	Potato	nucleus	32.83	31.45
CDX71526	Canola	nucleus	26.24	31.35
GSMUA_Achr5P17590_001	Banana	nucleus	29.6	31.22
Solyc12g088830.1.1	Tomato	nucleus	30.4	31.2
CDX68971	Canola	mitochondrion, nucleus, plastid	28.79	30.89
GSMUA_Achr10P...	Banana	cytosol	28.44	30.18
Bra033647.1-P	Field mustard	nucleus	24.97	29.96
CDY22380	Canola	nucleus	24.86	29.9
CDY17054	Canola	nucleus	24.51	29.86
AT1G45545.2	Thale cress	nucleus	25.55	29.35
Bra040259.1-P	Field mustard	nucleus	24.62	29.1
PGSC0003DMT400020677	Potato	nucleus	32.6	29.07
CDY17108	Canola	nucleus	24.51	29.0
CDY43212	Canola	nucleus	23.93	28.99
Bra014049.1-P	Field mustard	nucleus	25.2	28.91
AT5G42880.1	Thale cress	nucleus	24.97	28.76
CDY62582	Canola	nucleus	24.16	28.55
KRH51982	Soybean	nucleus	30.75	27.91
Solyc08g015840.1.1	Tomato	cytosol	6.13	27.04
KRH61284	Soybean	nucleus	30.29	26.93
KRH15355	Soybean	nucleus	30.06	25.74
TraesCS5B01G237000.1	Wheat	cytosol	22.08	24.21
TraesCS4B01G127500.1	Wheat	nucleus	16.53	22.56
TraesCS4B01G386100.1	Wheat	nucleus	17.23	22.04
TraesCS5B01G103500.1	Wheat	nucleus	15.49	20.97

Protein Annotations

EnsemblPlants:TraesCS4B01G300400.1	EnsemblPlantsGene:TraesCS4B01G300400	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF19
PFAM:PF05701	SEG:seg	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4B:+:586868655..586871620

Molecular Weight (calculated)

95979.0 Da

IEP (calculated)

4.801

GRAVY (calculated)

-0.660

Length

865 amino acids

Sequence
(BLAST)

001: MVEENLEVDD SSLSSPKSVQ NSLEPQPTEG TNEDDNNNLE KTACANLETP MHQELPASLI LSDEESNLQE ISVEQKAPVG DSIIGSSEVD HSGLPSIKED
101: SHSFPCASNE VDESKDAISD LMTVHTSEEN THATPQTSVS SRDEVQCAPL HNAQDGASCS DSEKTVCEAP PAILQKVKED KPRFMHRLPD RQMSLRDTRQ
201: KMPAPVRRLN SGNYSRTSNF FVDTTKPIES VKVAASRFGG SINWKTRKTE PVQVGDHVKL EVGLLKNEIS DCKQQAEAAG AAKLSVFNEI ERTNKLIENL
301: KHDLERAEHE EAHAKEDLDF FQFIVPEMEE GGASNDSVAG EEILKNIHER HKVLVSKLKL VKDELKGVQE DYDSLLIEQD ISIEKSQVAI IVSKESEKQA
401: EDLTVELNKL KEVLDLARAT CRDAEEHKAC ASLARDEDRL KWEKDLGQAE EELSQLNKKL SSVEDLKSEL ETSSSLLVKR NEELNAYVEA KLIKEAQEQG
501: NRTDETMQEE TILLSRNELE EQKKSIDKAR DEVCALTVTA ASLQSELSKE KEALATMQQL EAMASITISS LKAEIKLAQQ ELETVHAKEK KTCDRMGELP
601: GLLQVAAQEA DEAKSLAMKA HEMLRTSKGE MEQAKADLSA MEFRLQAVLK ETVAAKESER LSLDALRALE ESELAASNTE QGSPGMITLD LNEHASLIEK
701: SHQAEELLHK KISFAVAQVE MAKDSESLVL AKLSEVYKVL EERKQALLAA QKQADGATEG KLAMEQELRT WREEHGERRK ATAEALKSGT KHSNPMVIVV
801: ERDRDTKGTC KEDSCALVHP LSSDMSARSS PAGPGSREKV KKAKKPPFLR RMMLFLSRRR LTAAA

Best Arabidopsis Sequence Match ( AT1G45545.1 )
(BLAST)

001: MDDDHKVSND ISLLPDLNFD SSSPFTSIEF DSSICDLLNL ETGGDTPNLI PDHNPFFDSF DGLQEEEEDS HFVVEPESPK VYIAPRVMIN HQDSFSLDSR
101: NDEYIEDVKI LPGSPGGIQD LGLSRLKVPG SPRAFVHPRS SGSPRFVSPT SPVLIDTAAP FESVKEAVSK FGGITDWKAH KIQTIERRKT VDQELEKIQE
201: DMPDYKKQAV VAEEAKHQVV MELERTRNVV EELKLELEKA EKEEQQAKQD SDLAKLRVEE MEQGIAGEVS VAAKSQLEVA KARHLSAVSE LGTIREEIEM
301: VSNEYESLLT EKDLAAKKAE DSVLKAKDVE KQMEGLTMEV IATKQLLELA HATHLEAQEK KLDAAMARDQ DVYNQEKELK MVEDEIKRFR QDIDAADDVK
401: TKLKTASALQ QDLRAEIAAY KDSNMGKRNN SDIQAAVDSA RKELEEVISN IEKANSEVKT LKIIVGSLQS ELAREKHDLS ETRQRNREDT REEKCTEIAK
501: KLQEASREAE EAKSLAIAAR EELRKAKEES DEAKTGLSAV ERQLMESKKE MEASRASEKL ALAAIKALQE TEYANKIEDI SSSPKSIIIS VEEYYELSKQ
601: AHEVEEAANR KLAEIVSKIE VAKEEESRIL ENLEEVSRET AIRKVELKEA MTKVEKARDG KVGMDHELRK WRSDNGNRSP EGGNKENLSK SKSALHQPTT
701: FTFGEQASSS NVTPQASSSN VTPETETKKK KKRFSLLPKV FMFLSRKKSS NK

Arabidopsis Description

Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT1G45545]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.