Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G173700.1 | Wheat | nucleus | 90.73 | 90.73 |
| TraesCS2A01G166400.1 | Wheat | cytosol | 79.55 | 84.36 |
| HORVU2Hr1G030630.1 | Barley | nucleus | 78.48 | 83.23 |
| Os07t0619100-01 | Rice | plasma membrane | 54.93 | 56.55 |
| KXG36701 | Sorghum | nucleus | 54.58 | 55.64 |
| Zm00001d022161_P001 | Maize | nucleus | 52.44 | 55.12 |
| Solyc05g042150.1.1 | Tomato | cytosol | 12.01 | 52.6 |
| Solyc07g026880.1.1 | Tomato | cytosol | 9.39 | 51.3 |
| Bra034308.1-P | Field mustard | nucleus | 38.05 | 49.46 |
| TraesCS1B01G259500.1 | Wheat | nucleus | 44.71 | 49.21 |
| Solyc04g078950.1.1 | Tomato | nucleus | 17.72 | 48.85 |
| CDY48180 | Canola | nucleus | 39.71 | 45.26 |
| CDX77048 | Canola | nucleus | 39.95 | 44.39 |
| AT2G26570.1 | Thale cress | nucleus | 42.33 | 44.11 |
| CDY46119 | Canola | nucleus | 34.84 | 43.15 |
| AT4G33390.1 | Thale cress | nucleus | 39.95 | 43.13 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 42.69 | 42.54 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 44.35 | 42.53 |
| Bra041137.1-P | Field mustard | nucleus | 28.06 | 42.07 |
| Solyc07g022910.2.1 | Tomato | plastid | 42.21 | 41.91 |
| CDX72400 | Canola | nucleus | 33.53 | 41.47 |
| PGSC0003DMT400039921 | Potato | nucleus | 41.97 | 41.24 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 39.36 | 40.37 |
| PGSC0003DMT400011385 | Potato | nucleus | 43.28 | 40.31 |
| CDY22380 | Canola | nucleus | 34.01 | 39.78 |
| KRH07566 | Soybean | nucleus | 29.01 | 39.67 |
| Solyc12g088830.1.1 | Tomato | nucleus | 39.71 | 39.62 |
| Bra033647.1-P | Field mustard | nucleus | 33.89 | 39.53 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 37.81 | 39.45 |
| GSMUA_Achr10P... | Banana | cytosol | 38.17 | 39.39 |
| CDX71526 | Canola | nucleus | 33.06 | 38.4 |
| Solyc08g015840.1.1 | Tomato | cytosol | 8.8 | 37.76 |
| KRH45361 | Soybean | nucleus | 26.16 | 37.54 |
| PGSC0003DMT400020677 | Potato | nucleus | 42.81 | 37.11 |
| AT5G42880.1 | Thale cress | nucleus | 32.58 | 36.48 |
| KRH51982 | Soybean | nucleus | 41.26 | 36.41 |
| KRH61284 | Soybean | nucleus | 40.78 | 35.25 |
| AT1G45545.2 | Thale cress | nucleus | 31.39 | 35.06 |
| CDY43212 | Canola | nucleus | 29.25 | 34.45 |
| CDY17054 | Canola | nucleus | 28.78 | 34.08 |
| KRH15355 | Soybean | nucleus | 40.67 | 33.86 |
| Bra014049.1-P | Field mustard | nucleus | 30.2 | 33.69 |
| CDY17108 | Canola | nucleus | 28.66 | 32.97 |
| TraesCS5B01G237000.1 | Wheat | cytosol | 30.92 | 32.95 |
| Bra040259.1-P | Field mustard | nucleus | 28.66 | 32.92 |
| CDY62582 | Canola | nucleus | 28.54 | 32.79 |
| TraesCS4B01G300400.1 | Wheat | nucleus | 32.22 | 31.33 |
| TraesCS4B01G386100.1 | Wheat | nucleus | 22.35 | 27.81 |
| TraesCS5B01G103500.1 | Wheat | nucleus | 19.02 | 25.04 |
| TraesCS4B01G127500.1 | Wheat | nucleus | 18.31 | 24.29 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G192300.1 | EnsemblPlantsGene:TraesCS2B01G192300 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF16 |
| PFAM:PF05701 | SEG:seg | MapMan:20.5.8.1 | : | : | : |
Description
No Description!
Coordinates
chr2B:-:167797799..167800434
Molecular Weight (calculated)
93335.1 Da
IEP (calculated)
4.899
GRAVY (calculated)
-0.780
Length
841 amino acids
Sequence
(BLAST)
(BLAST)
001: MESTHASEEN NSKEPSPVEI PETYVDSPTL EVSSNGGHEN INANMENSAQ ADTSDISNGL PVAAEGSENP DIFVDSPTLE VSNGNHKNID AHKEKLAQAA
101: TLGISNGLSV AADDSELSSH SQVLVKSHPE VAEHDVESNS PTGTGPEILS NSGPTETSKH SGKGQADHSS SVYPVEVNHV EDKTRFQRKI AVKPKVIDES
201: EAKPESPYKG LIDTAAPFES VREAVTKFGG IVDWKAHKVQ MMERRKFIQL ELENAQKEIP QCKKELEAAE MAKSRVLDEL ETTKRIIEEL KHELEKAQME
301: EVQAKQDSEL AQLRVQEIER GVADDSSVIA KTQMEVAKER HEKSVAELKS VKEELRTLHE EYTTLVNERD RAIKRAEEVL AAGKDIEKRV EGLTVELIAA
401: KGSLELAHAA HHDAEERRIG AVLAKEQDCL AWDRELVQAQ EELQQLNNKL LSQNDLKKNL EANLRKLHGL KSELADYMES ILCKEALGVA KEHESEDARQ
501: ISSSIKETLA SAQKELEEVK ANIENTKTEA KLLRVAATTL RSELDREKAS LDSLQQREVM ASIAVSSLEA ELNRTQKEIE SVRSKEEDAQ EKMVELPKML
601: QQAAQEAEDA KDAAQAAEEE LRKAKEDTEQ TKAAATTTSS RLCAVLKEIE ASKASERLAL AAVRALKESK EASDVEDSPR GVTLPLSEYY ALSKKAQEAE
701: ELANEKVAEA LTQVESAKGS ELESLDRLTE AAKEMDEKKR TLELALERAE RANEGKLAAE QQLRKWRSDH EQRRKIQEAA KRAVNPVSSP FVDPYLKEQD
801: SRLHMSGSSY EDHVPNRKLR KKKSFLPRMG SFLSRNTPAQ T
101: TLGISNGLSV AADDSELSSH SQVLVKSHPE VAEHDVESNS PTGTGPEILS NSGPTETSKH SGKGQADHSS SVYPVEVNHV EDKTRFQRKI AVKPKVIDES
201: EAKPESPYKG LIDTAAPFES VREAVTKFGG IVDWKAHKVQ MMERRKFIQL ELENAQKEIP QCKKELEAAE MAKSRVLDEL ETTKRIIEEL KHELEKAQME
301: EVQAKQDSEL AQLRVQEIER GVADDSSVIA KTQMEVAKER HEKSVAELKS VKEELRTLHE EYTTLVNERD RAIKRAEEVL AAGKDIEKRV EGLTVELIAA
401: KGSLELAHAA HHDAEERRIG AVLAKEQDCL AWDRELVQAQ EELQQLNNKL LSQNDLKKNL EANLRKLHGL KSELADYMES ILCKEALGVA KEHESEDARQ
501: ISSSIKETLA SAQKELEEVK ANIENTKTEA KLLRVAATTL RSELDREKAS LDSLQQREVM ASIAVSSLEA ELNRTQKEIE SVRSKEEDAQ EKMVELPKML
601: QQAAQEAEDA KDAAQAAEEE LRKAKEDTEQ TKAAATTTSS RLCAVLKEIE ASKASERLAL AAVRALKESK EASDVEDSPR GVTLPLSEYY ALSKKAQEAE
701: ELANEKVAEA LTQVESAKGS ELESLDRLTE AAKEMDEKKR TLELALERAE RANEGKLAAE QQLRKWRSDH EQRRKIQEAA KRAVNPVSSP FVDPYLKEQD
801: SRLHMSGSSY EDHVPNRKLR KKKSFLPRMG SFLSRNTPAQ T
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.