Factsheet for TraesCS1D01G248300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G248800.1
TraesCS1B01G259500.1
TraesCS1D01G248300.1
TraesCS2A01G166400.1
TraesCS2B01G192300.1
TraesCS2D01G173700.1
TraesCS4B01G300400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	TraesCS1A01G248800.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS1B01G259500.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS1D01G248300.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2A01G166400.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2B01G192300.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS2D01G173700.1	AT2G26570.1	20974974
AT2G26570.1	TraesCS4B01G300400.1	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G248800.1	Wheat	nucleus	87.31	80.26
TraesCS1B01G259500.1	Wheat	nucleus	84.8	79.58
HORVU1Hr1G062330.8	Barley	nucleus	83.82	66.48
Os03t0395300-01	Rice	plasma membrane	60.25	55.67
Zm00001d029420_P002	Maize	nucleus	59.14	54.08
EER92167	Sorghum	nucleus	59.14	54.08
Zm00001d047240_P002	Maize	nucleus	56.76	51.85
Bra034308.1-P	Field mustard	nucleus	43.1	47.76
Solyc05g042150.1.1	Tomato	cytosol	12.69	47.4
Solyc04g078950.1.1	Tomato	nucleus	19.39	45.57
Solyc07g026880.1.1	Tomato	cytosol	9.34	43.51
CDX77048	Canola	nucleus	45.89	43.46
CDY48180	Canola	nucleus	44.49	43.22
TraesCS2D01G173700.1	Wheat	nucleus	50.49	43.04
VIT_18s0001g10560.t01	Wine grape	nucleus	47.56	40.4
Bra041137.1-P	Field mustard	nucleus	31.52	40.29
GSMUA_Achr6P10120_001	Banana	nucleus	49.09	40.14
AT4G33390.1	Thale cress	nucleus	43.51	40.05
AT2G26570.1	Thale cress	nucleus	44.91	39.9
CDX72400	Canola	nucleus	37.8	39.85
CDY46119	Canola	nucleus	36.68	38.73
Solyc07g022910.2.1	Tomato	plastid	45.75	38.72
PGSC0003DMT400039921	Potato	nucleus	45.75	38.32
KRH07566	Soybean	nucleus	32.78	38.21
CDX68971	Canola	mitochondrion, nucleus, plastid	42.82	38.09
GSMUA_Achr5P17590_001	Banana	nucleus	43.24	37.8
KRH45361	Soybean	nucleus	30.4	37.2
Solyc12g088830.1.1	Tomato	nucleus	43.51	37.01
PGSC0003DMT400011385	Potato	nucleus	46.3	36.77
Bra033647.1-P	Field mustard	nucleus	36.54	36.34
GSMUA_Achr10P...	Banana	cytosol	41.28	36.32
CDY22380	Canola	nucleus	36.12	36.02
CDX71526	Canola	nucleus	35.43	35.08
Solyc08g015840.1.1	Tomato	cytosol	9.48	34.69
PGSC0003DMT400020677	Potato	nucleus	46.03	34.02
AT5G42880.1	Thale cress	nucleus	35.56	33.95
AT1G45545.2	Thale cress	nucleus	34.87	33.2
KRH51982	Soybean	nucleus	43.93	33.05
KRH61284	Soybean	nucleus	44.07	32.48
CDY43212	Canola	nucleus	32.08	32.21
CDY17054	Canola	nucleus	31.8	32.11
CDY62582	Canola	nucleus	32.5	31.83
Bra014049.1-P	Field mustard	nucleus	33.47	31.83
CDY17108	Canola	nucleus	32.22	31.6
Bra040259.1-P	Field mustard	nucleus	32.08	31.42
KRH15355	Soybean	nucleus	43.65	30.99
TraesCS5D01G245400.1	Wheat	cytosol	32.64	29.66
TraesCS5D01G110400.2	Wheat	cytosol	21.2	23.79
TraesCS4D01G125200.1	Wheat	nucleus	19.8	22.4

Protein Annotations

EnsemblPlants:TraesCS1D01G248300.1	EnsemblPlantsGene:TraesCS1D01G248300	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2
PFAM:PF05701	SEG:seg	MapMan:20.5.8.1	:	:	:

Description

No Description!

Coordinates

chr1D:-:341237871..341240315

Molecular Weight (calculated)

79630.4 Da

IEP (calculated)

5.260

GRAVY (calculated)

-0.735

Length

717 amino acids

Sequence
(BLAST)

001: MFSRSDPAQV SNTSLNDKTD GETSRNNTEK VNNISDNGSG SDSTVVTSAR KSNGDNTDHR VNIATTPNKR AETETRPYKG LVDTAAPFES VKEVVSKFGG
101: IVDWKAYRTH TLERRGATQL ELEKVKQDIP QVKEGSETAE MARSLVVEEL ETTKRLVEEL KHKLERAEVE LEQSKQDSEL AQLRSQEMEL GIENGASVVA
201: QTELAVAKER HQKAIEELKM VKEGLGSTQE QYTTLVSERD AAIKRAEEAA SAAKESEKRV EELTLELFAS RESLELAHAA HHDAEEHRLG AALAREQDCL
301: AWERELQQAK EDLRQLDEQI LSKISVQSKL DGNKGILLRL SADLAAYMAS KSNEEAGAVE EHGSEEDREM IRSIKQALAS ARMELEGVRG NIAKTTDEAN
401: LIRAVAESLK TELDKEKASL VTLQQRESMA SITHSSLEAE LSRTKQEIEM AYTKEAESRA KMADIPKMLQ RAAQEADDAK VAAHSAREEL RKSKEEAEQA
501: KAAATTVEVR LRAALKEIEA SKASERLALV AAQALQESEE ATSAEDSPRV TLPVGEYYLL SKRVHEAEEL ASERVAASLA QIELAKESES RSLERLLEVT
601: RSMDQKKDAL KIASQRAAMA EEGKLGAEAQ LRKWRSEHKQ LRKAHEAAKY ATSPLSTPFA GYKEASYQEN KEVLTEPISY MSDNSMGGFV SDKKLRKKKT
701: FFPQMSTLFS RKVQTQT

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.