CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH07566
KRH15355
KRH45361
KRH51982
KRH61284

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	KRH07566	AT2G26570.1	20974974
AT2G26570.1	KRH15355	AT2G26570.1	20974974
AT2G26570.1	KRH45361	AT2G26570.1	20974974
AT2G26570.1	KRH51982	AT2G26570.1	20974974
AT2G26570.1	KRH61284	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51982	Soybean	nucleus	72.97	74.5
Solyc05g042150.1.1	Tomato	cytosol	13.36	67.71
Bra034308.1-P	Field mustard	nucleus	41.42	62.29
Solyc07g026880.1.1	Tomato	cytosol	9.76	61.69
VIT_18s0001g10560.t01	Wine grape	nucleus	49.23	56.75
CDX77048	Canola	nucleus	42.96	55.22
CDY48180	Canola	nucleus	41.73	55.01
AT2G26570.1	Thale cress	nucleus	44.71	53.9
Solyc04g078950.1.1	Tomato	nucleus	16.86	53.77
AT4G33390.1	Thale cress	nucleus	40.6	50.71
CDY46119	Canola	nucleus	35.15	50.37
KRH07566	Soybean	nucleus	31.55	49.92
Solyc07g022910.2.1	Tomato	plastid	43.37	49.82
CDX72400	Canola	nucleus	34.43	49.26
PGSC0003DMT400039921	Potato	nucleus	43.06	48.95
Bra041137.1-P	Field mustard	nucleus	28.16	48.84
KRH45361	Soybean	nucleus	29.19	48.46
Solyc12g088830.1.1	Tomato	nucleus	41.93	48.4
PGSC0003DMT400011385	Potato	nucleus	44.5	47.95
CDX68971	Canola	mitochondrion, nucleus, plastid	38.85	46.9
KRH15355	Soybean	nucleus	47.69	45.94
Solyc08g015840.1.1	Tomato	cytosol	9.25	45.92
PGSC0003DMT400020677	Potato	nucleus	44.71	44.85
TraesCS1D01G248300.1	Wheat	nucleus, plastid	32.48	44.07
CDY22380	Canola	nucleus	32.27	43.67
Bra033647.1-P	Field mustard	nucleus	32.27	43.55
GSMUA_Achr6P10120_001	Banana	nucleus	39.05	43.33
CDX71526	Canola	nucleus	32.07	43.09
Zm00001d029420_P002	Maize	nucleus	34.12	42.35
AT5G42880.1	Thale cress	nucleus	32.07	41.54
Os03t0395300-01	Rice	plasma membrane	33.09	41.49
EER92167	Sorghum	nucleus	33.4	41.45
GSMUA_Achr5P17590_001	Banana	nucleus	34.84	41.34
HORVU2Hr1G030630.1	Barley	nucleus	33.5	41.11
TraesCS1B01G259500.1	Wheat	nucleus	32.27	41.1
AT1G45545.2	Thale cress	nucleus	31.65	40.9
TraesCS2A01G166400.1	Wheat	cytosol	33.3	40.86
TraesCS2B01G192300.1	Wheat	nucleus	35.25	40.78
CDY62582	Canola	nucleus	30.63	40.71
GSMUA_Achr10P...	Banana	cytosol	34.02	40.61
Bra014049.1-P	Field mustard	nucleus	31.45	40.58
CDY17054	Canola	nucleus	29.6	40.56
TraesCS1A01G248800.1	Wheat	nucleus	32.48	40.51
CDY17108	Canola	nucleus	30.42	40.49
Zm00001d047240_P002	Maize	nucleus	32.48	40.25
CDY43212	Canola	nucleus	29.5	40.2
Bra040259.1-P	Field mustard	nucleus	30.22	40.16
GSMUA_Achr9P27100_001	Banana	nucleus	33.92	40.15
KXG36701	Sorghum	nucleus	33.92	40.0
Zm00001d022161_P001	Maize	nucleus	32.89	40.0
TraesCS2D01G173700.1	Wheat	nucleus	34.12	39.48
Os07t0619100-01	Rice	plasma membrane	32.17	38.31
GSMUA_Achr5P24580_001	Banana	cytosol	23.95	37.1
Os06t0314000-01	Rice	cytosol, nucleus	19.22	36.96
HORVU1Hr1G062330.8	Barley	nucleus	33.4	35.95
TraesCS4B01G300400.1	Wheat	nucleus	26.93	30.29
KRG98464	Soybean	mitochondrion	17.78	26.49
KRH46399	Soybean	cytosol	17.37	25.88
KRH75103	Soybean	nucleus	6.37	25.83
KRH36620	Soybean	cytosol, mitochondrion, nucleus	15.21	25.65
KRH11615	Soybean	cytosol, mitochondrion, nucleus	15.11	25.52
KRH73920	Soybean	nucleus	15.83	23.73
KRH51206	Soybean	cytosol	13.26	23.45
KRH01945	Soybean	cytosol, mitochondrion, nucleus	13.67	23.17

Protein Annotations

EntrezGene:100812902	MapMan:20.5.8.1	EMBL:ACUP02002160	ncoils:Coil	EnsemblPlantsGene:GLYMA_04G038600	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903
GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	UniProt:K7KHY4	EnsemblPlants:KRH61284	ProteinID:KRH61284
ProteinID:KRH61284.1	ProteinID:KRH61285.1	PFAM:PF05701	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2	UniParc:UPI0002339501
InterPro:Web	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:3068702..3075057

Molecular Weight (calculated)

106758.0 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.747

Length

973 amino acids

Sequence
(BLAST)

001: MEDVEDKIPP VTSSKITEET TLAEHVGDKL PSESSPKIAE ETPLAELVGD RLPSEASPKI AEETPLAEHV GDKLPSQFSS DIVEDTPLAE HAGDKLPSEF
101: SSEIVEETPL AEHVGDNQPS ASSSKIDEET PPAEHVTDNS ESSSKTAEES PLAEHVVDKL PSESTTKIAD EMPLADPPEE NTEVINPPGN QSSTEAPTIP
201: LSNGKMEPGT HLPVDEFSEL AVLPNASDDQ TLIQDVAVDV TEKSQQVTSA EDSEPGAVEN VSDRHELQDD ISNITADSDA DNEIRLSASS SETKDSQSDH
301: NELTMAMGTV GSLPRAKLFD AKRGLIDTTA PFESVKEAVS KFGGIVDWKA HRIHTVERRT LVEQELEKAQ EEIPEYKKQA ETAEQEKGQV LKELDSTKRL
401: IEELKLNLER AHTEERQARQ DSELAKLRVE EMEQGIADES SVAAKAQLEV AKARYTAAVS DLIAVKEELE ALHKEYTSLV TDRDVAIKKA EEAVTASKEV
501: EKSVEDLTVE LIAAKESLET THAAHLEAEE QRIGTVMARD QDSLNWEKEL KQAEEELQRL NQQISSAKEL KSKLETASAL LIDLKAELTA YMESKLKQEG
601: GPEEPEIKTH TDIREAVASA GKELEEVNLN IEKATAEISI LKVAATSLKL ELEQEKATLA SIRQREGMAS VAVASLEAEL EKTRSEIALV QMKEKEAKEK
701: MTELPKKLQL TAEETNQANL LAQAAREELQ KVKAEAEQAK AGVSTLESRL LAAQKEIEAA KASENLAIAA IKALQESEST RSKNEVDPSN GVTLSLEEYY
801: ELSKRAHEAE ERANMRVAAA NSEIDKVKES ELKAFEKLDE VNREIAARRE SLKLAMEKAE KAKEGKLGVE QELRKWRAES EQRRKAGESG QGVINQSKSP
901: RGSFEGKANN FDRTSDAANP AHYLTSPKAN EHADNDEGGS SPESKHGKKK KKSIFPRVLM FFARRKTHST KSG

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.