Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g042150.1.1 | Tomato | cytosol | 12.41 | 53.12 |
| Solyc07g026880.1.1 | Tomato | cytosol | 9.85 | 52.6 |
| Bra034308.1-P | Field mustard | nucleus | 38.44 | 48.84 |
| Solyc04g078950.1.1 | Tomato | nucleus | 16.79 | 45.25 |
| CDY48180 | Canola | nucleus | 39.29 | 43.77 |
| CDX77048 | Canola | nucleus | 39.42 | 42.8 |
| AT2G26570.1 | Thale cress | nucleus | 41.61 | 42.38 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 43.19 | 42.06 |
| Bra041137.1-P | Field mustard | nucleus | 28.47 | 41.71 |
| AT4G33390.1 | Thale cress | nucleus | 39.05 | 41.21 |
| GSMUA_Achr5P24580_001 | Banana | cytosol | 31.27 | 40.92 |
| Solyc07g022910.2.1 | Tomato | plastid | 41.48 | 40.26 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 42.7 | 40.02 |
| CDX72400 | Canola | nucleus | 32.97 | 39.85 |
| KRH07566 | Soybean | nucleus | 29.81 | 39.84 |
| Solyc08g015840.1.1 | Tomato | cytosol | 9.49 | 39.8 |
| CDY46119 | Canola | nucleus | 32.85 | 39.76 |
| KRH45361 | Soybean | nucleus | 28.22 | 39.59 |
| Solyc12g088830.1.1 | Tomato | nucleus | 40.39 | 39.38 |
| PGSC0003DMT400039921 | Potato | nucleus | 40.63 | 39.02 |
| GSMUA_Achr10P... | Banana | cytosol | 38.56 | 38.9 |
| PGSC0003DMT400011385 | Potato | nucleus | 42.21 | 38.43 |
| CDY22380 | Canola | nucleus | 33.21 | 37.97 |
| Bra033647.1-P | Field mustard | nucleus | 33.21 | 37.86 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 37.71 | 37.8 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 36.74 | 37.47 |
| AT5G42880.1 | Thale cress | nucleus | 34.06 | 37.28 |
| CDX71526 | Canola | nucleus | 32.0 | 36.33 |
| AT1G45545.2 | Thale cress | nucleus | 32.73 | 35.72 |
| CDY43212 | Canola | nucleus | 30.78 | 35.43 |
| PGSC0003DMT400020677 | Potato | nucleus | 41.48 | 35.15 |
| CDY17108 | Canola | nucleus | 30.78 | 34.61 |
| CDY62582 | Canola | nucleus | 30.78 | 34.56 |
| CDY17054 | Canola | nucleus | 29.81 | 34.51 |
| Bra040259.1-P | Field mustard | nucleus | 30.66 | 34.43 |
| KRH51982 | Soybean | nucleus | 39.78 | 34.31 |
| Bra014049.1-P | Field mustard | nucleus | 31.27 | 34.08 |
| KRH61284 | Soybean | nucleus | 40.15 | 33.92 |
| KRH15355 | Soybean | nucleus | 39.42 | 32.08 |
| GSMUA_Achr7P16580_001 | Banana | cytosol | 17.03 | 22.73 |
| GSMUA_Achr4P18510_001 | Banana | nucleus | 15.94 | 21.37 |
| GSMUA_AchrUn_... | Banana | nucleus | 14.72 | 19.12 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P27100_001 | EnsemblPlants:GSMUA_Achr9T27100_001 | EnsemblPlantsGene:GSMUA_Achr9G27100_001 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 |
| PANTHER:PTHR32054:SF2 | PFAM:PF05701 | SEG:seg | UniParc:UPI000296E19D | UniProt:M0U3W7 | MapMan:35.1 |
Description
Putative Protein PLASTID MOVEMENT IMPAIRED 2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G27100_001]
Coordinates
chr9:-:31374280..31379149
Molecular Weight (calculated)
91212.5 Da
IEP (calculated)
5.570
GRAVY (calculated)
-0.689
Length
822 amino acids
Sequence
(BLAST)
(BLAST)
001: MAQRQRQTWN RESSEASADL KDDFSSPSLP SCAIQQPHFA PRSPDGGVES GNKNFLGIGQ NNSDCPQMEE AMDTKKNSYL ANSFSSPDGS SAPDSKEDNG
101: NQQHGALDKN GKIPFLTNDL NTSTLDQRGF VVSENKPVIK LEGVKVDLPN VHRILAPYSS NESNELGTPQ NGVSENLKKY DASRVLVDTT APFESVKEAA
201: TKFGGIADWK AQKTLITERR KQVQFELKKA QEEIPTCKEQ HEAAEAVKGQ VLKELDYTKR LVEELKLSLE KAETQEAQAK QDSELADLRL KEIEKGITNN
301: SSVVAKTRLE VAKERHASAV AELISVKQEL ESMQRRYVLL VHEKDIAIRT AKESVSASKK LEKTVEDLTL ELITTKELLE SAHSAHLEAE EQRIGAALAL
401: EQDKLNWEKE MKQAESELQQ LNEQLLATND LKSKLDRASS LLVSLKVELA LYMESKLNLE VNSAGELNPI VQTGDINETE TNVQASLATT TKELEEVRFN
501: IENANDEVNC LRVALTRINT ELELILIREK EAREKLVELP KALQQAAEEA DQAKLIADLA REDLRKAKEE AEYAKAGAST LETRLTAALK EIEAAKASEK
601: LAISAVKALE ESEQASMECE DSSNGVTLPI EEYYRLSKKA NEAEEIANKK VISAIEQMKA AKESESRSLI QLEEANKRIK EKKKAQRAAV DKAKKAREGK
701: LGVEQELRTW RADHEQQRKL GGIRRSFSDS SNLVALGDTE SIASEAGSQT RSPRVHMARS NTTNAMPGSE RRPRSFFPRI VTFLARKKVQ SLNVKLGKYG
801: RGRYISYSIG GLNLECEGAS RG
101: NQQHGALDKN GKIPFLTNDL NTSTLDQRGF VVSENKPVIK LEGVKVDLPN VHRILAPYSS NESNELGTPQ NGVSENLKKY DASRVLVDTT APFESVKEAA
201: TKFGGIADWK AQKTLITERR KQVQFELKKA QEEIPTCKEQ HEAAEAVKGQ VLKELDYTKR LVEELKLSLE KAETQEAQAK QDSELADLRL KEIEKGITNN
301: SSVVAKTRLE VAKERHASAV AELISVKQEL ESMQRRYVLL VHEKDIAIRT AKESVSASKK LEKTVEDLTL ELITTKELLE SAHSAHLEAE EQRIGAALAL
401: EQDKLNWEKE MKQAESELQQ LNEQLLATND LKSKLDRASS LLVSLKVELA LYMESKLNLE VNSAGELNPI VQTGDINETE TNVQASLATT TKELEEVRFN
501: IENANDEVNC LRVALTRINT ELELILIREK EAREKLVELP KALQQAAEEA DQAKLIADLA REDLRKAKEE AEYAKAGAST LETRLTAALK EIEAAKASEK
601: LAISAVKALE ESEQASMECE DSSNGVTLPI EEYYRLSKKA NEAEEIANKK VISAIEQMKA AKESESRSLI QLEEANKRIK EKKKAQRAAV DKAKKAREGK
701: LGVEQELRTW RADHEQQRKL GGIRRSFSDS SNLVALGDTE SIASEAGSQT RSPRVHMARS NTTNAMPGSE RRPRSFFPRI VTFLARKKVQ SLNVKLGKYG
801: RGRYISYSIG GLNLECEGAS RG
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.