Factsheet for Solyc07g026880.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078950.1.1
Solyc05g042150.1.1
Solyc07g022910.2.1
Solyc07g026880.1.1
Solyc08g015840.1.1
Solyc12g088830.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	Solyc04g078950.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc05g042150.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g022910.2.1	AT2G26570.1	20974974
AT2G26570.1	Solyc07g026880.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc08g015840.1.1	AT2G26570.1	20974974
AT2G26570.1	Solyc12g088830.1.1	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g042150.1.1	Tomato	cytosol	73.38	58.85
Solyc08g015840.1.1	Tomato	cytosol	40.91	32.14
Solyc12g088830.1.1	Tomato	nucleus	83.77	15.3
PGSC0003DMT400039921	Potato	nucleus	82.47	14.84
Bra034308.1-P	Field mustard	nucleus	59.09	14.06
Bra041137.1-P	Field mustard	nucleus	45.45	12.48
CDY48180	Canola	nucleus	59.09	12.33
CDX72400	Canola	nucleus	53.9	12.21
Solyc07g022910.2.1	Tomato	plastid	66.88	12.16
CDY46119	Canola	nucleus	53.25	12.08
CDX77048	Canola	nucleus	58.44	11.89
VIT_18s0001g10560.t01	Wine grape	nucleus	62.99	11.49
AT4G33390.1	Thale cress	nucleus	57.14	11.3
AT2G26570.1	Thale cress	nucleus	59.09	11.28
CDY22380	Canola	nucleus	48.7	10.43
CDX71526	Canola	nucleus	48.7	10.36
CDX68971	Canola	mitochondrion, nucleus, plastid	53.9	10.3
GSMUA_Achr5P17590_001	Banana	nucleus	54.55	10.24
KRH07566	Soybean	nucleus	40.91	10.24
HORVU2Hr1G030630.1	Barley	nucleus	52.6	10.21
Bra033647.1-P	Field mustard	nucleus	47.4	10.12
KRH51982	Soybean	nucleus	61.69	9.97
GSMUA_Achr10P...	Banana	cytosol	52.6	9.94
KRH45361	Soybean	nucleus	37.66	9.9
GSMUA_Achr9P27100_001	Banana	nucleus	52.6	9.85
TraesCS2A01G166400.1	Wheat	cytosol	50.65	9.84
AT1G45545.2	Thale cress	nucleus	48.05	9.83
Bra014049.1-P	Field mustard	nucleus	48.05	9.81
KRH61284	Soybean	nucleus	61.69	9.76
KRH15355	Soybean	nucleus	62.99	9.6
GSMUA_Achr6P10120_001	Banana	nucleus	53.9	9.46
AT5G42880.1	Thale cress	nucleus	46.1	9.45
TraesCS2D01G173700.1	Wheat	nucleus	51.3	9.39
TraesCS2B01G192300.1	Wheat	nucleus	51.3	9.39
Zm00001d022161_P001	Maize	nucleus	48.7	9.38
TraesCS1D01G248300.1	Wheat	nucleus, plastid	43.51	9.34
GSMUA_Achr5P24580_001	Banana	cytosol	37.66	9.24
Zm00001d029420_P002	Maize	nucleus	46.75	9.18
CDY17108	Canola	nucleus	43.51	9.17
CDY17054	Canola	nucleus	41.56	9.01
Os07t0619100-01	Rice	plasma membrane	47.4	8.94
EER92167	Sorghum	nucleus	45.45	8.93
CDY43212	Canola	nucleus	40.91	8.82
Zm00001d047240_P002	Maize	nucleus	44.81	8.79
Bra040259.1-P	Field mustard	nucleus	41.56	8.74
CDY62582	Canola	nucleus	41.56	8.74
KXG36701	Sorghum	nucleus	46.75	8.73
Os03t0395300-01	Rice	plasma membrane	43.51	8.63
TraesCS1A01G248800.1	Wheat	nucleus	43.51	8.59
TraesCS1B01G259500.1	Wheat	nucleus	42.21	8.51
HORVU1Hr1G062330.8	Barley	nucleus	44.16	7.52
TraesCS4B01G300400.1	Wheat	nucleus	37.01	6.59
Solyc04g015110.2.1	Tomato	plastid	24.68	6.1
Solyc07g065680.2.1	Tomato	nucleus	23.38	5.33
Os06t0314000-01	Rice	cytosol, nucleus	13.64	4.15
Solyc04g078950.1.1	Tomato	nucleus	0.65	0.33

Protein Annotations

EnsemblPlants:Solyc07g026880.1.1	EnsemblPlantsGene:Solyc07g026880.1	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF2
PFAM:PF05701	SEG:seg	UniParc:UPI000276AE38	UniProt:K4CDD2	MapMan:35.1	:

Description

No Description!

Coordinates

chr7:+:32116694..32117356

Molecular Weight (calculated)

17256.6 Da

IEP (calculated)

4.881

GRAVY (calculated)

-0.501

Length

154 amino acids

Sequence
(BLAST)

001: MDTLGCRRCK SASLKELDST KRLIEELKLN LERAQTEEQQ ARQDLEHATL RVEDMERGIA DDSSIAAKAQ LEVARARLEV AVSKLKSINS KLDVLRKDYD
101: LLVSEKDAVE KAEEDVSVSN KVEKTLEDLT IELITSKDAL EAAHDAHLVK KSIL

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.