Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26570.1 | CDX77048 | AT2G26570.1 | 20974974 |
| AT2G26570.1 | CDY48180 | AT2G26570.1 | 20974974 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034308.1-P | Field mustard | nucleus | 77.51 | 88.41 |
| CDX77048 | Canola | nucleus | 78.73 | 76.75 |
| AT2G26570.1 | Thale cress | nucleus | 69.38 | 63.44 |
| Solyc05g042150.1.1 | Tomato | cytosol | 15.99 | 61.46 |
| Solyc07g026880.1.1 | Tomato | cytosol | 12.33 | 59.09 |
| Solyc04g078950.1.1 | Tomato | nucleus | 22.09 | 53.44 |
| CDY46119 | Canola | nucleus | 49.05 | 53.31 |
| CDX72400 | Canola | nucleus | 48.51 | 52.65 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 58.4 | 51.07 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 54.88 | 50.25 |
| KRH07566 | Soybean | nucleus | 40.11 | 48.13 |
| Solyc12g088830.1.1 | Tomato | nucleus | 53.93 | 47.21 |
| Solyc07g022910.2.1 | Tomato | plastid | 53.79 | 46.87 |
| PGSC0003DMT400039921 | Potato | nucleus | 54.2 | 46.73 |
| PGSC0003DMT400011385 | Potato | nucleus | 57.05 | 46.62 |
| KRH45361 | Soybean | nucleus | 36.59 | 46.08 |
| CDY22380 | Canola | nucleus | 43.36 | 44.51 |
| TraesCS1D01G248300.1 | Wheat | nucleus, plastid | 43.22 | 44.49 |
| CDX71526 | Canola | nucleus | 43.09 | 43.92 |
| KRH51982 | Soybean | nucleus | 56.5 | 43.76 |
| Solyc08g015840.1.1 | Tomato | cytosol | 11.52 | 43.37 |
| HORVU2Hr1G030630.1 | Barley | nucleus | 45.53 | 42.37 |
| Os03t0395300-01 | Rice | plasma membrane | 44.31 | 42.14 |
| CDY17054 | Canola | nucleus | 40.38 | 41.97 |
| TraesCS1B01G259500.1 | Wheat | nucleus | 43.22 | 41.75 |
| KRH61284 | Soybean | nucleus | 55.01 | 41.73 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 49.46 | 41.62 |
| TraesCS2A01G166400.1 | Wheat | cytosol | 44.72 | 41.61 |
| CDY17108 | Canola | nucleus | 40.92 | 41.31 |
| CDY43212 | Canola | nucleus | 39.84 | 41.18 |
| PGSC0003DMT400020677 | Potato | nucleus | 53.93 | 41.03 |
| TraesCS1A01G248800.1 | Wheat | nucleus | 43.36 | 41.03 |
| KRH15355 | Soybean | nucleus | 55.56 | 40.59 |
| EER92167 | Sorghum | nucleus | 43.09 | 40.56 |
| Zm00001d029420_P002 | Maize | nucleus | 42.82 | 40.31 |
| CDY62582 | Canola | nucleus | 39.97 | 40.3 |
| Zm00001d022161_P001 | Maize | nucleus | 43.5 | 40.12 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 44.58 | 40.12 |
| KXG36701 | Sorghum | nucleus | 44.44 | 39.76 |
| TraesCS2B01G192300.1 | Wheat | nucleus | 45.26 | 39.71 |
| TraesCS2D01G173700.1 | Wheat | nucleus | 44.85 | 39.36 |
| GSMUA_Achr9P27100_001 | Banana | nucleus | 43.77 | 39.29 |
| Zm00001d047240_P002 | Maize | nucleus | 41.33 | 38.85 |
| GSMUA_Achr10P... | Banana | cytosol | 42.68 | 38.65 |
| Os07t0619100-01 | Rice | plasma membrane | 42.14 | 38.07 |
| Os06t0314000-01 | Rice | cytosol, nucleus | 25.61 | 37.35 |
| GSMUA_Achr5P24580_001 | Banana | cytosol | 31.17 | 36.62 |
| HORVU1Hr1G062330.8 | Barley | nucleus | 44.04 | 35.95 |
| TraesCS4B01G300400.1 | Wheat | nucleus | 35.09 | 29.94 |
| CDY36768 | Canola | nucleus | 21.14 | 24.19 |
| CDY28631 | Canola | nucleus | 21.27 | 24.08 |
| CDY17364 | Canola | nucleus | 21.27 | 24.04 |
| CDY11973 | Canola | nucleus | 20.6 | 23.64 |
| CDY11974 | Canola | cytosol, nucleus, plastid | 8.81 | 22.41 |
| CDY42964 | Canola | cytosol | 15.45 | 21.92 |
| CDY31245 | Canola | cytosol | 16.12 | 21.72 |
| CDX90485 | Canola | cytosol | 15.58 | 21.7 |
| CDY35594 | Canola | nucleus | 15.31 | 21.61 |
| CDY21038 | Canola | cytosol | 15.99 | 21.57 |
| CDY09639 | Canola | cytosol | 15.45 | 21.47 |
| CDY50127 | Canola | cytosol | 15.04 | 21.22 |
| CDY58167 | Canola | cytosol | 14.91 | 21.15 |
| CDY15972 | Canola | cytosol | 17.34 | 14.27 |
| CDY26542 | Canola | cytosol | 17.89 | 13.08 |
| CDY35593 | Canola | cytosol | 5.69 | 12.46 |
Protein Annotations
| EnsemblPlants:CDY48180 | EnsemblPlantsGene:GSBRNA2T00088995001 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF2 |
| PFAM:PF05701 | ProteinID:CDY48180 | ProteinID:CDY48180.1 | SEG:seg | UniParc:UPI0004EE583E | UniProt:A0A078IBC2 |
| MapMan:20.5.8.1 | : | : | : | : | : |
Description
BnaA04g15440DBnaA04g15440D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IBC2]
Coordinates
chrLK032758:-:43688..46771
Molecular Weight (calculated)
81716.7 Da
IEP (calculated)
4.869
GRAVY (calculated)
-0.768
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELKPPEVE TVSEPALRTS EATVTADAVS DNAATVIPPP SQTDGSTGNA TSYVDDTVSN PEESSVIASH ATATVEKTNE ITGEIGLPRV KITEGTLRNG
101: GTSSSSHGSP VDSHRGLIDT AAPFESVKEA VSKFGGITDW KSHRIQTVER RKLIEEELKK IHEEIPEYRT HSETAEAAKL QVLKELETTK RLIEQLKLNL
201: EKAQTEEQQA KQDSELAKLR VEEMEQGISD DVSVAAKAQL EVAKARYASA VTELRSVKEE LETLRSEYDA LVKDRDESVK KVEEAMSVSK EVEKRVEELT
301: IELIATKESL ESAHASHLEA EEQRIGAAMA RDQDAHRWEK EMKQAEEQVQ KLNQEILSSK DLKSKLDTAS ALLLDLKAEL VAYMESKLNQ EARDLPSESH
401: HDASKKELED VKTSIEKAAA EVNCLKVASE SLQLELEKEK SALASVKQRE GMASIAVASL EAEIERTKSE IALVQCKEKE SRDKMVELPK QLQQAAEEAD
501: EAKFLSECAR EELRKAKEEA EQAKAGASTM ESRLFAAQKE IEAAKASERL ALAAIKALEE SGSTLKDNDV VTLSLEEYYE LSKRAHEAEE AANERVAAAV
601: SRIEEAKEAE TRSLEKLEEV NRDMNARKKS LKEATEKAEK AKEGKLGVEQ ELRKWRAEHE QKRKVGGDTE KIIRASSAGA NELGKLAQSP EVYSPSESYG
701: TEDNSETSQF PPSKPGKKKK KLSLPRFFMF LSKKKSHN
101: GTSSSSHGSP VDSHRGLIDT AAPFESVKEA VSKFGGITDW KSHRIQTVER RKLIEEELKK IHEEIPEYRT HSETAEAAKL QVLKELETTK RLIEQLKLNL
201: EKAQTEEQQA KQDSELAKLR VEEMEQGISD DVSVAAKAQL EVAKARYASA VTELRSVKEE LETLRSEYDA LVKDRDESVK KVEEAMSVSK EVEKRVEELT
301: IELIATKESL ESAHASHLEA EEQRIGAAMA RDQDAHRWEK EMKQAEEQVQ KLNQEILSSK DLKSKLDTAS ALLLDLKAEL VAYMESKLNQ EARDLPSESH
401: HDASKKELED VKTSIEKAAA EVNCLKVASE SLQLELEKEK SALASVKQRE GMASIAVASL EAEIERTKSE IALVQCKEKE SRDKMVELPK QLQQAAEEAD
501: EAKFLSECAR EELRKAKEEA EQAKAGASTM ESRLFAAQKE IEAAKASERL ALAAIKALEE SGSTLKDNDV VTLSLEEYYE LSKRAHEAEE AANERVAAAV
601: SRIEEAKEAE TRSLEKLEEV NRDMNARKKS LKEATEKAEK AKEGKLGVEQ ELRKWRAEHE QKRKVGGDTE KIIRASSAGA NELGKLAQSP EVYSPSESYG
701: TEDNSETSQF PPSKPGKKKK KLSLPRFFMF LSKKKSHN
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.