Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26570.1 | CDX77048 | AT2G26570.1 | 20974974 |
| AT2G26570.1 | CDY48180 | AT2G26570.1 | 20974974 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48180 | Canola | nucleus | 76.75 | 78.73 |
| AT2G26570.1 | Thale cress | nucleus | 67.9 | 63.69 |
| Solyc05g042150.1.1 | Tomato | cytosol | 15.72 | 61.98 |
| Solyc07g026880.1.1 | Tomato | cytosol | 11.89 | 58.44 |
| CDY46119 | Canola | nucleus | 48.74 | 54.34 |
| CDX72400 | Canola | nucleus | 47.95 | 53.38 |
| Solyc04g078950.1.1 | Tomato | nucleus | 21.14 | 52.46 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 56.67 | 50.83 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 54.03 | 50.74 |
| KRH07566 | Soybean | nucleus | 38.84 | 47.8 |
| Solyc07g022910.2.1 | Tomato | plastid | 52.58 | 46.99 |
| PGSC0003DMT400039921 | Potato | nucleus | 52.71 | 46.61 |
| PGSC0003DMT400011385 | Potato | nucleus | 55.22 | 46.29 |
| CDY22380 | Canola | nucleus | 43.86 | 46.18 |
| CDX71526 | Canola | nucleus | 43.99 | 45.99 |
| Solyc12g088830.1.1 | Tomato | nucleus | 51.12 | 45.91 |
| TraesCS1D01G248300.1 | Wheat | nucleus, plastid | 43.46 | 45.89 |
| KRH45361 | Soybean | nucleus | 35.27 | 45.56 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 50.2 | 43.33 |
| KRH61284 | Soybean | nucleus | 55.22 | 42.96 |
| CDY17054 | Canola | nucleus | 40.29 | 42.96 |
| KRH51982 | Soybean | nucleus | 54.03 | 42.92 |
| HORVU2Hr1G030630.1 | Barley | nucleus | 44.91 | 42.88 |
| Os03t0395300-01 | Rice | plasma membrane | 43.59 | 42.53 |
| CDY43212 | Canola | nucleus | 40.03 | 42.44 |
| Solyc08g015840.1.1 | Tomato | cytosol | 10.96 | 42.35 |
| TraesCS2A01G166400.1 | Wheat | cytosol | 44.25 | 42.24 |
| CDY62582 | Canola | nucleus | 40.69 | 42.08 |
| TraesCS1B01G259500.1 | Wheat | nucleus | 42.4 | 42.02 |
| PGSC0003DMT400020677 | Potato | nucleus | 53.76 | 41.96 |
| EER92167 | Sorghum | nucleus | 43.33 | 41.84 |
| CDY17108 | Canola | nucleus | 40.29 | 41.72 |
| TraesCS1A01G248800.1 | Wheat | nucleus | 42.67 | 41.41 |
| Zm00001d029420_P002 | Maize | nucleus | 42.8 | 41.33 |
| GSMUA_Achr10P... | Banana | cytosol | 43.99 | 40.86 |
| KRH15355 | Soybean | nucleus | 54.43 | 40.79 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 43.86 | 40.49 |
| Zm00001d047240_P002 | Maize | nucleus | 41.61 | 40.13 |
| TraesCS2B01G192300.1 | Wheat | nucleus | 44.39 | 39.95 |
| TraesCS2D01G173700.1 | Wheat | nucleus | 44.25 | 39.83 |
| KXG36701 | Sorghum | nucleus | 43.2 | 39.64 |
| GSMUA_Achr9P27100_001 | Banana | nucleus | 42.8 | 39.42 |
| Zm00001d022161_P001 | Maize | nucleus | 41.48 | 39.25 |
| Os06t0314000-01 | Rice | cytosol, nucleus | 25.63 | 38.34 |
| Os07t0619100-01 | Rice | plasma membrane | 40.55 | 37.58 |
| GSMUA_Achr5P24580_001 | Banana | cytosol | 31.04 | 37.42 |
| HORVU1Hr1G062330.8 | Barley | nucleus | 43.46 | 36.39 |
| TraesCS4B01G300400.1 | Wheat | nucleus | 34.61 | 30.29 |
| CDY28631 | Canola | nucleus | 20.61 | 23.93 |
| CDY11973 | Canola | nucleus | 20.21 | 23.79 |
| CDY17364 | Canola | nucleus | 20.48 | 23.74 |
| CDY36768 | Canola | nucleus | 20.21 | 23.72 |
| CDY11974 | Canola | cytosol, nucleus, plastid | 8.32 | 21.72 |
| CDY21038 | Canola | cytosol | 15.59 | 21.57 |
| CDY35594 | Canola | nucleus | 14.66 | 21.22 |
| CDY50127 | Canola | cytosol | 14.66 | 21.22 |
| CDY31245 | Canola | cytosol | 15.32 | 21.17 |
| CDY42964 | Canola | cytosol | 14.4 | 20.96 |
| CDY58167 | Canola | cytosol | 14.4 | 20.96 |
| CDX90485 | Canola | cytosol | 14.66 | 20.94 |
| CDY09639 | Canola | cytosol | 14.53 | 20.72 |
| CDY15972 | Canola | cytosol | 17.44 | 14.72 |
| CDY26542 | Canola | cytosol | 17.31 | 12.98 |
| CDY35593 | Canola | cytosol | 5.68 | 12.76 |
Protein Annotations
| EnsemblPlants:CDX77048 | EnsemblPlantsGene:GSBRNA2T00127619001 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF2 |
| PFAM:PF05701 | ProteinID:CDX77048 | ProteinID:CDX77048.1 | SEG:seg | UniParc:UPI0004EF48A5 | MapMan:20.5.8.1 |
Description
BnaC04g38430D
Coordinates
chrLK031809:-:699606..702485
Molecular Weight (calculated)
83779.6 Da
IEP (calculated)
4.834
GRAVY (calculated)
-0.819
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MEELKPPEVE TSSEPATRTS EATVTADAVS DNAATVIPPP SQTDGSTTGN ATGSYVDDTF SNPEESSFIA SHETATTVEK VTPNPTISGK VSETNEITGE
101: IGLPRVKITE GTSRNGGTSS SSHGSPVDSS YRGLIDTAAP FESVKEAVSK FGGITDWKSH RIQTVERRKL IEEELKKIQE EIPEYRTHSE TAEAAKLQVL
201: KELETTKRLI EQLKLNLEKA QTEEQQAKQD SELAKLRVEE MEQGISDDVS VAAKAQLEVA KARFASAVTE LRSVKEELET LRSEYDALVK DRDESVKKVE
301: EATSASKEVE KRVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DAHRWEKELK QAEEQVQKLN QEILSSKDLK SKLDTASALL LDLKAELVAY
401: MESKLNQEAR DLPSESRHDA SKKELEDVKT SIEKAAAEVN CLKVASESLQ LELEKEKSAL ASVKQREGMA SIAVASLEAE IERTRSEIAS VQCKEKESRD
501: KMVELPKQLQ QAAEEADEAK FLSERAREEL RKAKEEAEQA KAGASTMESR LFAAQKEIEA AKASERLALA AIKALEESES TSKDNDVVTL SLEEYYELSK
601: RAHEAEEAAN ERVAAAVSRI EEAKEAERRS LEKLEEVNRD MNARKKSLKE ATEKAEKAKE GKLGVEQELR KWRAEHEQKR KVGGDTEKII RASSAGANEL
701: SKLAQSPEAY AYSPSESYGT EDNSETSQFP PSKPGKKKKK LSLPRFLMFL SKKKSHN
101: IGLPRVKITE GTSRNGGTSS SSHGSPVDSS YRGLIDTAAP FESVKEAVSK FGGITDWKSH RIQTVERRKL IEEELKKIQE EIPEYRTHSE TAEAAKLQVL
201: KELETTKRLI EQLKLNLEKA QTEEQQAKQD SELAKLRVEE MEQGISDDVS VAAKAQLEVA KARFASAVTE LRSVKEELET LRSEYDALVK DRDESVKKVE
301: EATSASKEVE KRVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DAHRWEKELK QAEEQVQKLN QEILSSKDLK SKLDTASALL LDLKAELVAY
401: MESKLNQEAR DLPSESRHDA SKKELEDVKT SIEKAAAEVN CLKVASESLQ LELEKEKSAL ASVKQREGMA SIAVASLEAE IERTRSEIAS VQCKEKESRD
501: KMVELPKQLQ QAAEEADEAK FLSERAREEL RKAKEEAEQA KAGASTMESR LFAAQKEIEA AKASERLALA AIKALEESES TSKDNDVVTL SLEEYYELSK
601: RAHEAEEAAN ERVAAAVSRI EEAKEAERRS LEKLEEVNRD MNARKKSLKE ATEKAEKAKE GKLGVEQELR KWRAEHEQKR KVGGDTEKII RASSAGANEL
701: SKLAQSPEAY AYSPSESYGT EDNSETSQFP PSKPGKKKKK LSLPRFLMFL SKKKSHN
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.