CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90485	Canola	cytosol	95.29	95.47
CDY42964	Canola	cytosol	79.1	80.77
AT4G17210.1	Thale cress	cytosol, plastid	75.89	76.47
CDY50127	Canola	cytosol	74.76	75.91
CDY58167	Canola	cytosol	74.2	75.77
CDY35594	Canola	nucleus	73.63	74.76
CDY21038	Canola	cytosol	36.35	35.28
CDY31245	Canola	cytosol	35.4	34.31
KRH36620	Soybean	cytosol, mitochondrion, nucleus	33.9	31.2
KRH51206	Soybean	cytosol	32.2	31.09
KRH01945	Soybean	cytosol, mitochondrion, nucleus	32.96	30.49
KRH11615	Soybean	cytosol, mitochondrion, nucleus	32.39	29.86
CDY11974	Canola	cytosol, nucleus, plastid	14.69	26.9
GSMUA_Achr4P18510_001	Banana	nucleus	29.76	25.77
TraesCS4D01G125200.1	Wheat	nucleus	30.51	25.55
TraesCS4B01G127500.1	Wheat	nucleus	30.51	25.55
OQU79020	Sorghum	nucleus	31.26	25.5
PGSC0003DMT400034621	Potato	mitochondrion, plastid	21.66	25.5
GSMUA_Achr7P16580_001	Banana	cytosol	29.57	25.49
TraesCS4A01G188200.1	Wheat	nucleus	30.51	25.47
Os12t0271600-01	Rice	plasma membrane	30.89	25.35
Zm00001d023629_P001	Maize	nucleus	30.51	24.85
Zm00001d041088_P004	Maize	nucleus	30.32	24.81
Solyc04g015110.2.1	Tomato	plastid	29.0	24.72
HORVU5Hr1G029890.1	Barley	nucleus	29.94	24.65
PGSC0003DMT400050839	Potato	nucleus	28.81	24.64
TraesCS5D01G110400.2	Wheat	cytosol	29.57	24.57
TraesCS5A01G098800.2	Wheat	cytosol	29.57	24.57
TraesCS5B01G103500.1	Wheat	nucleus	29.0	24.1
CDY36768	Canola	nucleus	27.68	22.79
CDY17364	Canola	nucleus	27.87	22.66
CDY28631	Canola	nucleus	27.31	22.24
CDY11973	Canola	nucleus	26.55	21.93
GSMUA_AchrUn_...	Banana	nucleus	25.61	21.48
CDY15972	Canola	cytosol	34.84	20.62
CDY26542	Canola	cytosol	33.9	17.84
CDY22380	Canola	nucleus	21.47	15.86
CDX71526	Canola	nucleus	21.09	15.47
CDY48180	Canola	nucleus	21.47	15.45
CDY46119	Canola	nucleus	19.02	14.87
CDX68971	Canola	mitochondrion, nucleus, plastid	22.41	14.76
CDX72400	Canola	nucleus	18.83	14.71
CDX77048	Canola	nucleus	20.72	14.53
CDY43212	Canola	nucleus	19.4	14.43
CDY17054	Canola	nucleus	19.02	14.23
CDY17108	Canola	nucleus	18.08	13.13
CDY62582	Canola	nucleus	18.08	13.11
CDY35593	Canola	cytosol	7.34	11.57

Protein Annotations

EnsemblPlants:CDY09639	EnsemblPlantsGene:GSBRNA2T00031285001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF3
PFAM:PF05701	ProteinID:CDY09639	ProteinID:CDY09639.1	SEG:seg	UniParc:UPI0004EDD9F0	UniProt:A0A078F9G2
MapMan:35.1	:	:	:	:	:

Description

BnaC07g34220DBnaC07g34220D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9G2]

Coordinates

chrLK031998:+:143729..145830

Molecular Weight (calculated)

61156.1 Da

IEP (calculated)

4.673

GRAVY (calculated)

-0.947

Length

531 amino acids

Sequence
(BLAST)

001: MAKMRADAPV MPPETLPRSS EVGEIDTRAP FQSVRDAVSL FRQVSFPKQE QQQQQQQRLS SSTSSSQDAP DASAEKETQL LLAEQEMERV QLCLDTSVKA
101: KAKALSDLDS AQRKASDLRA KLEATKQSRK SAIMTKHTMT QRLEQLQSEN QETESVREDY ILSTAELFMA KRELKEIKQE FSISVEERLA ELQKAEEAEC
201: SSVVNSRKIK DMTEEIAEMQ DTVLRLNTDA DKKKEEEVKI NEERMAAREA YAARKRDAEQ RLEDLRRDCD PELRKEIDEL AEISAGIERL QEEIKLAREL
301: NEAKSEMQEI CDEERSYKSL VGSLTVELDG VQRENRDLKE NEKERREVEE GEWVEASRKV EVIMREAEET RQEAEEMRMH VDELRREAAA THMSMGEAVK
401: QLEIVGKAVK KAKTAEKRAV EDMRVLTDKK ESLTHGEPDK KIRISLKEYE ELRGRHEESE RMVQYKAKTV AAQLEEINAS RVEGERMLEE KLKEMEEVND
501: AIDAALRNAE IAEEAHCIVD AELRKWKPQE L

Best Arabidopsis Sequence Match ( AT4G17210.1 )
(BLAST)

001: MAKIRTDAPV MPPETPPRSS EVGEIDTRAP FQSVRDALSL FRQVSFSKKQ PPRLSSSSSS QSQDTTTDVS DKEMQLLLAE QEMDRVKICL DGSVAAKAQA
101: LSDLDSAQRK AADLRVKLES IKHSRKCAIS TKHTMNQRLE QLQSENQETE STREDYILIT AELFMAKYEL AELKQQFNLS VEERLAELQR AEEAECASMV
201: NSNKIKDMSH DIAEMRDAAE RLNSDAARKK EEEEQIKEES IALRETYVCK KLEAKQRLED LKRDCDPELK KDIEELMEIS TENERLQEEI KLSGELKEAK
301: SAMQEIYDEE SSYKSLVGSL TVELDGVQRE NRELKGKEKE RQEAEEGEWV EASRKVDEIM REAEKTRKEA EEMRMNVDEL RREAAAKHMV MGEAVKQLEI
401: VGRAVEKAKT AEKRAVEDMK VLTEKKESLT HDEPDKKIRI SLKEYEELRG KHEESERMVQ FKAKTVAAQL EEINESRIEG ERKLEEKIKE MEELKAAIDG
501: ALRKAEIAEE AHSIVDAELR KWKPQDL

Arabidopsis Description

Putative WEB family protein At4g17210 [Source:UniProtKB/Swiss-Prot;Acc:O23564]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.