CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28631	Canola	nucleus	15.13	7.82
CDY17364	Canola	nucleus	14.54	7.5
CDX90485	Canola	cytosol	11.57	7.36
CDY09639	Canola	cytosol	11.57	7.34
CDY11973	Canola	nucleus	13.65	7.15
CDY42964	Canola	cytosol	10.98	7.12
CDY11974	Canola	cytosol, nucleus, plastid	5.93	6.9
CDY35594	Canola	nucleus	10.68	6.88
CDY36768	Canola	nucleus	13.06	6.82
CDY58167	Canola	cytosol	10.09	6.54
CDY50127	Canola	cytosol	9.79	6.31
CDY21038	Canola	cytosol	10.09	6.22
CDY31245	Canola	cytosol	10.09	6.2
CDX68971	Canola	mitochondrion, nucleus, plastid	14.54	6.08
CDY46119	Canola	nucleus	12.17	6.04
CDX72400	Canola	nucleus	12.17	6.03
CDY48180	Canola	nucleus	12.46	5.69
CDX77048	Canola	nucleus	12.76	5.68
CDX71526	Canola	nucleus	12.17	5.66
CDY22380	Canola	nucleus	11.28	5.29
CDY62582	Canola	nucleus	11.28	5.19
CDY43212	Canola	nucleus	10.68	5.04
CDY17054	Canola	nucleus	10.09	4.79
CDY17108	Canola	nucleus	10.09	4.65
Zm00001d014236_P001	Maize	nucleus	6.53	4.28
CDY15972	Canola	cytosol	9.5	3.57
CDY26542	Canola	cytosol	9.2	3.07

Protein Annotations

KEGG:04658+3.1.3.16	KEGG:04660+3.1.3.16	MapMan:18.4.25.1.8	Gene3D:3.10.20.90	Gene3D:3.40.50.1000	GO:A0A078HFK8
UniProt:A0A078HFK8	EnsemblPlants:CDY35593	ProteinID:CDY35593	ProteinID:CDY35593.1	ncoils:Coil	InterPro:FCP1_dom
GO:GO:0003674	GO:GO:0003824	GO:GO:0004721	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006470	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00058947001	InterPro:HAD-SF_hydro_IIID
InterPro:HAD-like_sf	InterPro:HAD_sf	InterPro:IPR000626	InterPro:IPR004274	InterPro:IPR023214	PFAM:PF00240
PFAM:PF03031	PFscan:PS50053	PFscan:PS50969	PANTHER:PTHR32054	PANTHER:PTHR32054:SF0	SMART:SM00213
SMART:SM00577	SUPFAM:SSF54236	SUPFAM:SSF56784	TIGRFAMs:TIGR02245	UniParc:UPI0004EDB3FB	InterPro:Ubiquitin-like_domsf
InterPro:Ubiquitin_dom	SEG:seg	:	:	:	:

Description

BnaC01g21150DBnaC01g21150D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HFK8]

Coordinates

chrLK032356:+:86542..88382

Molecular Weight (calculated)

38881.0 Da

IEP (calculated)

6.013

GRAVY (calculated)

-0.335

Length

337 amino acids

Sequence
(BLAST)

001: MASSSSSSPT PDAVTAMDEE LTLIVKWSGK EYTLRICADD SVAELKRRIC FLTNVLPKRQ KLLYPKVGNK LSDDSLLLSQ IPLKPSLKMT MIGTTEDDII
101: VDQVTSDDVV DDFELGKEEV VDIEDKEINK QKLRRRIDQY KIKLVNPCRK GKKLLVLDID YTLFDHRSTA ENPLQLMRPY LHEFLTAAYA EYDIIIWSAT
201: SMKWVELKMG ELGVLNNPNY KITALLDHLA MITVQSDTRG IFDCKPLGLI WALLPELYNA QNTIMFDDLR RNFVMNPQNG LKIRPFRKAH VNRDKDDELV
301: LLTRYLLTIA ELDDLSSLDH SRWETFTEDS VKRRRHT

Best Arabidopsis Sequence Match ( AT4G06599.1 )
(BLAST)

001: MASSSSSPTP SAAAAVSPLT EEELTLTVKW NGKEYTVRIC ADDSVAELKR RICLLTTVLP KRQKLLYPKI GNKLSDDSLL LSSISFKPSL KMTMIGTVED
101: DIIVDQAESP EIVDDFELGK EEAVDVKDKE VNKQKLRRRI DQYKINLRTP CRQGKKLLVL DIDYTLFDHR STAENPLQLM RPYLHEFLTA AYAEYDIMIW
201: SATSMKWVEL KMTELGVLNN PNYKVTALLD HLAMITVQSD TRGIFDCKPL GLIWALLPEF YNPGNTIMFD DLRRNFVMNP QNGLTIKPFR KAHANRDTDQ
301: ELVKLTQYLL TIAELSDLSS LHHSRWESFS QDNVKRRRQE

Arabidopsis Description

Ubiquitin-like domain-containing CTD phosphatase [Source:UniProtKB/Swiss-Prot;Acc:Q8W3M6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.