CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36768	Canola	nucleus	94.48	42.48
CDY11973	Canola	nucleus	89.66	40.44
Bra028956.1-P	Field mustard	nucleus	87.59	39.44
CDY17364	Canola	nucleus	77.24	34.3
CDY28631	Canola	nucleus	76.21	33.9
AT5G55860.1	Thale cress	nucleus	74.83	33.44
PGSC0003DMT400057359	Potato	nucleus	52.07	22.37
Solyc07g065680.2.1	Tomato	nucleus	51.72	22.22
VIT_19s0015g00740.t01	Wine grape	nucleus	47.93	21.38
KRG98464	Soybean	mitochondrion	47.93	21.29
KRH46399	Soybean	cytosol	47.59	21.13
GSMUA_Achr4P18510_001	Banana	nucleus	44.48	21.04
GSMUA_Achr7P16580_001	Banana	cytosol	43.45	20.45
CDY31245	Canola	cytosol	37.24	19.71
CDY21038	Canola	cytosol	36.9	19.56
KRH73920	Soybean	nucleus	43.45	19.41
GSMUA_AchrUn_...	Banana	nucleus	40.69	18.64
Os12t0271600-01	Rice	plasma membrane	41.03	18.39
TraesCS5A01G098800.2	Wheat	cytosol	40.34	18.31
TraesCS5B01G103500.1	Wheat	nucleus	40.34	18.31
TraesCS4A01G188200.1	Wheat	nucleus	40.0	18.24
Zm00001d041088_P004	Maize	nucleus	40.69	18.18
TraesCS4D01G125200.1	Wheat	nucleus	39.66	18.14
TraesCS5D01G110400.2	Wheat	cytosol	39.66	18.0
TraesCS4B01G127500.1	Wheat	nucleus	39.31	17.98
OQU79020	Sorghum	nucleus	40.34	17.97
Zm00001d023629_P001	Maize	nucleus	40.0	17.79
HORVU5Hr1G029890.1	Barley	nucleus	39.31	17.67
CDY58167	Canola	cytosol	27.24	15.19
CDY09639	Canola	cytosol	26.9	14.69
CDY50127	Canola	cytosol	26.21	14.53
CDX90485	Canola	cytosol	26.55	14.53
CDY35594	Canola	nucleus	25.52	14.15
CDY42964	Canola	cytosol	25.17	14.04
CDY15972	Canola	cytosol	37.24	12.04
CDY26542	Canola	cytosol	36.9	10.6
CDY48180	Canola	nucleus	22.41	8.81
CDX77048	Canola	nucleus	21.72	8.32
CDY46119	Canola	nucleus	19.31	8.25
CDX72400	Canola	nucleus	18.62	7.94
CDX71526	Canola	nucleus	19.31	7.73
CDY22380	Canola	nucleus	18.97	7.65
CDX68971	Canola	mitochondrion, nucleus, plastid	21.03	7.57
CDY17054	Canola	nucleus	16.9	6.9
CDY43212	Canola	nucleus	16.9	6.86
CDY62582	Canola	nucleus	16.9	6.69
CDY17108	Canola	nucleus	16.55	6.57
CDY35593	Canola	cytosol	6.9	5.93
KRH75103	Soybean	nucleus	0.69	0.83

Protein Annotations

EnsemblPlants:CDY11974	EnsemblPlantsGene:GSBRNA2T00060823001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF3
PFAM:PF05701	ProteinID:CDY11974	ProteinID:CDY11974.1	SEG:seg	UniParc:UPI0004EEED77	UniProt:A0A078FG85
MapMan:35.1	:	:	:	:	:

Description

BnaC03g14000DBnaC03g14000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FG85]

Coordinates

chrLK032015:-:673484..674858

Molecular Weight (calculated)

32572.3 Da

IEP (calculated)

4.824

GRAVY (calculated)

-0.691

Length

290 amino acids

Sequence
(BLAST)

001: MVAKKGRQDS SPSVEVGEID TSAPFQSVKH AVNLFGEAAL SADNHPLIRK PTPHSAEKVL VKQTELHLAE KELNKLKEQV NHAETVREQA LSELDWAKRT
101: VDELTRKLEA VNESRDSANK VTEAAKSQIK EAQPETVSVS STDDEYVMVC KELDAAKQEL RTIRQVSNEV ADSKTVALTK EEEAKEVTKV SSEKIELLRE
201: EITAVNASVE QTKLACSQSR KDQSEIFSEK EIQQQAYKAG MEESGKKLLA LKKEFDPEFA KKLEAQLSET YNEIDELQKQ MELLGFCIYY

Best Arabidopsis Sequence Match ( AT5G55860.1 )
(BLAST)

001: MVAKKGRRDS SDSSPIVEVG EIDTSAPFQS VKDAVNLFGE AAFSAEKPVF RKPNPQSAEK VLVKQTELHL AQKELNKLKE QLKNAETIRE QALSELEWSK
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF

Arabidopsis Description

WEB family protein At5g55860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.