CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

mitochondrion: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75103	Soybean	nucleus	34.76	94.58
KRH46399	Soybean	cytosol	94.49	94.49
VIT_19s0015g00740.t01	Wine grape	nucleus	70.29	70.62
KRH73920	Soybean	nucleus	69.07	69.49
Solyc07g065680.2.1	Tomato	nucleus	64.01	61.93
PGSC0003DMT400057359	Potato	nucleus	64.01	61.93
CDY17364	Canola	nucleus	55.44	55.44
CDY28631	Canola	nucleus	55.28	55.37
AT5G55860.1	Thale cress	nucleus	54.98	55.32
Bra002870.1-P	Field mustard	nucleus	55.28	55.28
GSMUA_Achr4P18510_001	Banana	nucleus	51.61	54.98
GSMUA_Achr7P16580_001	Banana	cytosol	50.69	53.73
CDY36768	Canola	nucleus	52.22	52.87
CDY11973	Canola	nucleus	51.76	52.57
Os12t0271600-01	Rice	plasma membrane	52.07	52.55
Bra028956.1-P	Field mustard	nucleus	51.3	52.02
Zm00001d041088_P004	Maize	nucleus	51.3	51.62
OQU79020	Sorghum	nucleus	51.3	51.46
Zm00001d023629_P001	Maize	nucleus	49.77	49.85
TraesCS4B01G127500.1	Wheat	nucleus	48.39	49.84
TraesCS4A01G188200.1	Wheat	nucleus	48.39	49.69
TraesCS4D01G125200.1	Wheat	nucleus	48.09	49.53
CDY11974	Canola	cytosol, nucleus, plastid	21.29	47.93
HORVU5Hr1G029890.1	Barley	nucleus	46.86	47.44
TraesCS5D01G110400.2	Wheat	cytosol	46.4	47.42
TraesCS5B01G103500.1	Wheat	nucleus	46.4	47.42
TraesCS5A01G098800.2	Wheat	cytosol	46.4	47.42
GSMUA_AchrUn_...	Banana	nucleus	41.19	42.5
KRH11615	Soybean	cytosol, mitochondrion, nucleus	37.06	42.01
KRH36620	Soybean	cytosol, mitochondrion, nucleus	35.99	40.73
KRH51206	Soybean	cytosol	33.23	39.45
KRH01945	Soybean	cytosol, mitochondrion, nucleus	34.46	39.2
KRH07566	Soybean	nucleus	22.66	24.07
KRH45361	Soybean	nucleus	20.06	22.35
KRH51982	Soybean	nucleus	26.65	18.26
KRH61284	Soybean	nucleus	26.49	17.78
KRH15355	Soybean	nucleus	25.27	16.34

Protein Annotations

EntrezGene:100794569	MapMan:35.1	EMBL:ACUP02010889	ncoils:Coil	EnsemblPlantsGene:GLYMA_18G075600	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0009903
GO:GO:0009904	GO:GO:0009987	GO:GO:0016043	UniProt:I1N092	EnsemblPlants:KRG98464	ProteinID:KRG98464
ProteinID:KRG98464.1	PFAM:PF05701	PANTHER:PTHR32054	PANTHER:PTHR32054:SF3	UniParc:UPI000233DF93	InterPro:Web
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:7166159..7171186

Molecular Weight (calculated)

72557.8 Da

IEP (calculated)

5.207

GRAVY (calculated)

-0.721

Length

653 amino acids

Sequence
(BLAST)

001: MVAKIRQSAT ESPNPKPEVG EIDTSPPFQS VKDAVSLFGE GAFSGEKPIF KKAKPYSAER VLAKETQLHV AQKELNKLRE QVKNAETTKA QALVELERAK
101: RTVEDLTQKI KVISDSRELA IEATEAAKSQ AKQLTEEKYG VPDGTNVAWK EELEAAVKRY ASVMTELDAA KQALSKTRQE YDSSLDAKKS AFKLAAEAGD
201: ASKENTERAS ELSKEISAVK ESIEQAKLAS IVAQQQQTMI LAEKDVLRQS YKATLEQSEK KLLALKKEFS PELAKNLEMQ LAETMSEIGT LQKEMENKRT
301: SDLDSVKSVT LELDDAKESL QKVADEESSL RSLVESLKVE LENVKREHSE LQDKESETES IVGNLHVKLR KCKSELEACM AEESKVRGAS EEMILTLSQL
401: TSETENARRE AEDMKNRTAE LKKEVEVTML ALEEAEKNLK VALEEAEAAK AAEKSALDQI TILTERTTAA RASTSESGAV ITISKEEFDS LSHKVEESDK
501: LADMKVAAAK AQVEAVKASE NEALKRLETT QKEIEDIKTA TQEALKKAEM AEAAKRAVES ELRRWREREQ KRAAEAASRI LAETQVSTES SPQHYRIQKQ
601: NPPRTMVEVK KFEKEKVSVS KKTLLPNISG IFQRKKNQVE GGSPSYLPGE NPV

Best Arabidopsis Sequence Match ( AT5G55860.1 )
(BLAST)

001: MVAKKGRRDS SDSSPIVEVG EIDTSAPFQS VKDAVNLFGE AAFSAEKPVF RKPNPQSAEK VLVKQTELHL AQKELNKLKE QLKNAETIRE QALSELEWSK
101: RTVDELTRKL EAVNESRDSA NKATEAAKSL IEEAKPGNVS VASSSDAQTR DMEEYGEVCK ELDTAKQELR KIRQVSNEIL ETKTVALSKV EEAKKVSKVH
201: SEKIELLRKE IAAVNESVEQ TKLACSQARK EQSEIFAEKE IQQKSYKAGM EESAKKSLAL KNEFDPEFAK KLEVQLTETY NEIDELQKQM ETAKASDIDS
301: VNGVSLELNE AKGLFEKLVE EEKSLQELVE SLKAELKNVK MEHDEVEAKE AEIESVAGDL HLKLSRSKSE LEQCVTEESK AKAALEDMML TINQISSETE
401: AARREAEGMR NKAKELMKEA ESAHLALEDS ELHLRVALDE AEEAKAAETK ALEQIKSMSE KTNAARNSTS SESGSQSITL SQEEFKSLSK RAEVFDKLAE
501: MKVAAALAQV EAVRASENET LKKLETTQEE IKKLKTATEE ALKKAAMADA AKKAVEGELR RWRERDQKKA EEAATRILAE AEMKMASESS PQQHYKAPKQ
601: KPVNNKLEKT KTSVVSKKVL MPNLSGIFNR KKNQVEWGSP SYLPGEKPF

Arabidopsis Description

WEB family protein At5g55860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.