CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY58167	Canola	cytosol	89.67	90.19
CDY35594	Canola	nucleus	75.53	75.53
CDY42964	Canola	cytosol	74.38	74.81
CDY09639	Canola	cytosol	75.91	74.76
CDX90485	Canola	cytosol	75.53	74.53
AT4G17210.1	Thale cress	cytosol, plastid	73.23	72.68
CDY21038	Canola	cytosol	37.09	35.47
CDY31245	Canola	cytosol	35.76	34.12
KRH51206	Soybean	cytosol	32.31	30.73
KRH36620	Soybean	cytosol, mitochondrion, nucleus	32.5	29.46
KRH01945	Soybean	cytosol, mitochondrion, nucleus	32.12	29.27
KRH11615	Soybean	cytosol, mitochondrion, nucleus	31.74	28.82
CDY11974	Canola	cytosol, nucleus, plastid	14.53	26.21
GSMUA_Achr7P16580_001	Banana	cytosol	29.83	25.32
PGSC0003DMT400034621	Potato	mitochondrion, plastid	21.8	25.28
OQU79020	Sorghum	nucleus	31.36	25.19
GSMUA_Achr4P18510_001	Banana	nucleus	29.25	24.96
Os12t0271600-01	Rice	plasma membrane	30.78	24.88
TraesCS4A01G188200.1	Wheat	nucleus	29.83	24.53
Zm00001d041088_P004	Maize	nucleus	30.4	24.5
TraesCS4D01G125200.1	Wheat	nucleus	29.64	24.45
TraesCS4B01G127500.1	Wheat	nucleus	29.64	24.45
Zm00001d023629_P001	Maize	nucleus	30.4	24.39
PGSC0003DMT400050839	Potato	nucleus	28.11	23.67
Solyc04g015110.2.1	Tomato	plastid	27.92	23.43
TraesCS5A01G098800.2	Wheat	cytosol	28.49	23.32
TraesCS5B01G103500.1	Wheat	nucleus	28.49	23.32
TraesCS5D01G110400.2	Wheat	cytosol	28.49	23.32
CDY17364	Canola	nucleus	29.06	23.28
HORVU5Hr1G029890.1	Barley	nucleus	28.49	23.1
CDY28631	Canola	nucleus	28.3	22.7
CDY36768	Canola	nucleus	27.34	22.17
CDY11973	Canola	nucleus	26.39	21.46
GSMUA_AchrUn_...	Banana	nucleus	25.43	21.01
CDY15972	Canola	cytosol	35.37	20.62
CDY26542	Canola	cytosol	34.8	18.04
CDY22380	Canola	nucleus	21.61	15.72
CDX71526	Canola	nucleus	21.41	15.47
CDY48180	Canola	nucleus	21.22	15.04
CDY46119	Canola	nucleus	19.12	14.73
CDY43212	Canola	nucleus	20.08	14.71
CDX72400	Canola	nucleus	19.12	14.71
CDX77048	Canola	nucleus	21.22	14.66
CDX68971	Canola	mitochondrion, nucleus, plastid	22.37	14.52
CDY17054	Canola	nucleus	19.69	14.51
CDY62582	Canola	nucleus	19.89	14.21
CDY17108	Canola	nucleus	19.5	13.95
CDY35593	Canola	cytosol	6.31	9.79

Protein Annotations

EnsemblPlants:CDY50127	EnsemblPlantsGene:GSBRNA2T00095943001	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054	PANTHER:PTHR32054:SF3
PFAM:PF05701	ProteinID:CDY50127	ProteinID:CDY50127.1	SEG:seg	UniParc:UPI0004EF1B33	UniProt:A0A078IJP1
MapMan:35.1	:	:	:	:	:

Description

BnaCnng18760DBnaCnng18760D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IJP1]

Coordinates

chrLK032883:-:24968..26606

Molecular Weight (calculated)

60348.4 Da

IEP (calculated)

4.807

GRAVY (calculated)

-0.903

Length

523 amino acids

Sequence
(BLAST)

001: MAKNRADAPV ETPPRMSEVV GEIDTRSPFQ SVRDAVSLFR QASFSKQQQQ PRLSSPSSSQ DATDVSEKET QLLLAEQEMD RVQLCLDTSV KAKARALSDL
101: DSAQRKAFDL RAKLEATKHS KKSAILTKHT MNQRLEKLQS RSQETERARE NYILATAGLL MARQKLAEIK QEFSISVEER LSELHRAEEA ECATVVNSQK
201: IRDMTHEISE MRDAAERLKS GADRIKKEEE KINEERVDMG ETYGDMKQEA ELRLEDLRRG CDPELRKDID ELEEISAENE LLQEEIKLAR ELKEAKSAMR
301: EIFDEERSYK SLVGSLTVEL DGVQRENRDL KGKENERKAF EEVEWVEVSR KVDEIISEAE RTRQEAEEMR MQVDELRREA AGRRTVMGEA VKQLEIVGRA
401: VVKAKTAERR AVEDMRVLTD KKESLTHDEP DKKIRISLKE YEELRGKHEE SERMVQYKAK TVAVQLEEIK ESRVEGEIML EEKMKEMEEV EEAIDSALRN
501: AEIAEEAHCI VDAELRKWKP QEL

Best Arabidopsis Sequence Match ( AT4G17210.1 )
(BLAST)

001: MAKIRTDAPV MPPETPPRSS EVGEIDTRAP FQSVRDALSL FRQVSFSKKQ PPRLSSSSSS QSQDTTTDVS DKEMQLLLAE QEMDRVKICL DGSVAAKAQA
101: LSDLDSAQRK AADLRVKLES IKHSRKCAIS TKHTMNQRLE QLQSENQETE STREDYILIT AELFMAKYEL AELKQQFNLS VEERLAELQR AEEAECASMV
201: NSNKIKDMSH DIAEMRDAAE RLNSDAARKK EEEEQIKEES IALRETYVCK KLEAKQRLED LKRDCDPELK KDIEELMEIS TENERLQEEI KLSGELKEAK
301: SAMQEIYDEE SSYKSLVGSL TVELDGVQRE NRELKGKEKE RQEAEEGEWV EASRKVDEIM REAEKTRKEA EEMRMNVDEL RREAAAKHMV MGEAVKQLEI
401: VGRAVEKAKT AEKRAVEDMK VLTEKKESLT HDEPDKKIRI SLKEYEELRG KHEESERMVQ FKAKTVAAQL EEINESRIEG ERKLEEKIKE MEELKAAIDG
501: ALRKAEIAEE AHSIVDAELR KWKPQDL

Arabidopsis Description

Putative WEB family protein At4g17210 [Source:UniProtKB/Swiss-Prot;Acc:O23564]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.