Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d022161_P001 | |
| Zm00001d029420_P002 | |
| Zm00001d047240_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G26570.1 | Zm00001d022161_P001 | AT2G26570.1 | 20974974 |
| AT2G26570.1 | Zm00001d029420_P002 | AT2G26570.1 | 20974974 |
| AT2G26570.1 | Zm00001d047240_P002 | AT2G26570.1 | 20974974 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92167 | Sorghum | nucleus | 81.51 | 81.51 |
| Zm00001d047240_P002 | Maize | nucleus | 77.68 | 77.58 |
| Os03t0395300-01 | Rice | plasma membrane | 60.08 | 60.7 |
| TraesCS1D01G248300.1 | Wheat | nucleus, plastid | 54.08 | 59.14 |
| TraesCS1A01G248800.1 | Wheat | nucleus | 58.29 | 58.59 |
| TraesCS1B01G259500.1 | Wheat | nucleus | 56.25 | 57.72 |
| Zm00001d022161_P001 | Maize | nucleus | 51.79 | 50.75 |
| HORVU1Hr1G062330.8 | Barley | nucleus | 58.16 | 50.44 |
| Solyc05g042150.1.1 | Tomato | cytosol | 12.12 | 49.48 |
| Bra034308.1-P | Field mustard | nucleus | 38.9 | 47.14 |
| Solyc07g026880.1.1 | Tomato | cytosol | 9.18 | 46.75 |
| Solyc04g078950.1.1 | Tomato | nucleus | 17.22 | 44.26 |
| CDY48180 | Canola | nucleus | 40.31 | 42.82 |
| CDX77048 | Canola | nucleus | 41.33 | 42.8 |
| AT4G33390.1 | Thale cress | nucleus | 42.09 | 42.36 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 46.56 | 41.62 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 44.77 | 41.59 |
| Solyc07g022910.2.1 | Tomato | plastid | 43.88 | 40.61 |
| CDX72400 | Canola | nucleus | 35.2 | 40.59 |
| AT2G26570.1 | Thale cress | nucleus | 41.58 | 40.4 |
| CDY46119 | Canola | nucleus | 34.06 | 39.32 |
| Bra041137.1-P | Field mustard | nucleus | 27.93 | 39.04 |
| KRH07566 | Soybean | nucleus | 30.48 | 38.86 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 39.8 | 38.71 |
| KRH45361 | Soybean | nucleus | 28.7 | 38.4 |
| PGSC0003DMT400039921 | Potato | nucleus | 41.84 | 38.32 |
| Solyc12g088830.1.1 | Tomato | nucleus | 40.56 | 37.72 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 39.16 | 37.44 |
| PGSC0003DMT400011385 | Potato | nucleus | 42.73 | 37.1 |
| GSMUA_Achr10P... | Banana | cytosol | 38.01 | 36.56 |
| Solyc08g015840.1.1 | Tomato | cytosol | 8.93 | 35.71 |
| CDY22380 | Canola | nucleus | 32.65 | 35.6 |
| Bra033647.1-P | Field mustard | nucleus | 32.53 | 35.37 |
| KRH51982 | Soybean | nucleus | 42.47 | 34.94 |
| CDX71526 | Canola | nucleus | 31.63 | 34.25 |
| KRH61284 | Soybean | nucleus | 42.35 | 34.12 |
| Bra014049.1-P | Field mustard | nucleus | 32.78 | 34.08 |
| CDY17054 | Canola | nucleus | 30.87 | 34.08 |
| PGSC0003DMT400020677 | Potato | nucleus | 42.09 | 34.02 |
| CDY43212 | Canola | nucleus | 30.48 | 33.47 |
| AT1G45545.2 | Thale cress | nucleus | 32.14 | 33.47 |
| AT5G42880.1 | Thale cress | nucleus | 31.51 | 32.89 |
| CDY62582 | Canola | nucleus | 30.48 | 32.65 |
| CDY17108 | Canola | nucleus | 30.23 | 32.42 |
| Bra040259.1-P | Field mustard | nucleus | 30.1 | 32.24 |
| KRH15355 | Soybean | nucleus | 40.94 | 31.78 |
| Zm00001d048523_P001 | Maize | nucleus | 24.74 | 31.09 |
| Zm00001d027322_P001 | Maize | cytosol | 26.79 | 29.83 |
| Zm00001d005893_P001 | Maize | cytosol | 27.81 | 28.68 |
| Zm00001d020719_P002 | Maize | nucleus | 28.44 | 28.34 |
| Zm00001d023629_P001 | Maize | nucleus | 19.77 | 23.77 |
| Zm00001d041088_P004 | Maize | nucleus | 19.26 | 23.27 |
| Zm00001d014236_P001 | Maize | nucleus | 8.8 | 13.42 |
Protein Annotations
| EMBL:BT061351 | EnsemblPlants:Zm00001d029420_P002 | EnsemblPlants:Zm00001d029420_T002 | EnsemblPlantsGene:Zm00001d029420 | EntrezGene:100194103 | InterPro:Web |
| ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF2 | PFAM:PF05701 | ProteinID:ONL98694.1 | ProteinID:ONL98696.1 |
| SEG:seg | UniParc:UPI00019486F7 | UniProt:C0HG95 | MapMan:20.5.8.1 | : | : |
Description
Protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1
Coordinates
chr1:-:69749777..69753725
Molecular Weight (calculated)
87326.1 Da
IEP (calculated)
4.948
GRAVY (calculated)
-0.797
Length
784 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLDTNGHG KTRAQNAENM APVSVKSPDT SLEIKEKSPH NLTEHQEELG PPVGHDGSLS PKILSHIQPT QASDDSSKDE GDHAAVTNKD GVETISENGF
101: TGSNIRPTVE KKSEEDNVYS HETVAATPKK KVEPVKGSEG SYTGLVDTSA PFESVKEAVT KFGGIVDWKA YRAQSLERRR VVHLELEKVQ QEIPQFKEDW
201: ETAEVAKSDV IEELERTNRL VDELKHKLER AQLEVDQAKQ DSELALLRAQ EMEQGIDDDA SVIAQTQLAV AKERHEKAVE ELKLLKEELR STHEQYAVLA
301: TERDAAIKRA EEVVCAAKDT EKQVEELTLE LIASKESLEL AHASHHEAEE HRLGAAMAKE QDFLAWEKEL EEAQAELNQL NEQIASKRNV ESKAHENECK
401: LLGLKSELAA YVENKLNEEA GMVQEQGSDE AKEISRSIKQ ALASKRKELA EFKGKLENAR IEANLVRVVV ESLSSELDRE KASLATLQQT EGMACITVAS
501: LEAELDRTEQ EIELVHKKEA ETREMMAELP RMLQQAAQEA DDAKMAAHLA QEELRKAKEE AERTKASATT ADTRLRAVLK EIEASKASKG LAIAAVQAMQ
601: ESNDAGSAGA SPRGVTLPIS EYHALSKRVH EAEELASERV AAAFAQIELA KESESRNLER LQEASKEMDE KKSDLQIALE RAESANEGKL GAEQELRRWR
701: AEHVQRRKAH EATQHPVSPV RTPPRMLVEQ KGSYREENEL PTDPKLHKSN GSMDQFVSSE KSRKKKSFFP QMSTLLSRKA QTQT
101: TGSNIRPTVE KKSEEDNVYS HETVAATPKK KVEPVKGSEG SYTGLVDTSA PFESVKEAVT KFGGIVDWKA YRAQSLERRR VVHLELEKVQ QEIPQFKEDW
201: ETAEVAKSDV IEELERTNRL VDELKHKLER AQLEVDQAKQ DSELALLRAQ EMEQGIDDDA SVIAQTQLAV AKERHEKAVE ELKLLKEELR STHEQYAVLA
301: TERDAAIKRA EEVVCAAKDT EKQVEELTLE LIASKESLEL AHASHHEAEE HRLGAAMAKE QDFLAWEKEL EEAQAELNQL NEQIASKRNV ESKAHENECK
401: LLGLKSELAA YVENKLNEEA GMVQEQGSDE AKEISRSIKQ ALASKRKELA EFKGKLENAR IEANLVRVVV ESLSSELDRE KASLATLQQT EGMACITVAS
501: LEAELDRTEQ EIELVHKKEA ETREMMAELP RMLQQAAQEA DDAKMAAHLA QEELRKAKEE AERTKASATT ADTRLRAVLK EIEASKASKG LAIAAVQAMQ
601: ESNDAGSAGA SPRGVTLPIS EYHALSKRVH EAEELASERV AAAFAQIELA KESESRNLER LQEASKEMDE KKSDLQIALE RAESANEGKL GAEQELRRWR
701: AEHVQRRKAH EATQHPVSPV RTPPRMLVEQ KGSYREENEL PTDPKLHKSN GSMDQFVSSE KSRKKKSFFP QMSTLLSRKA QTQT
001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN
Arabidopsis Description
WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.