Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G248300.1 | Wheat | nucleus, plastid | 79.58 | 84.8 |
| TraesCS1A01G248800.1 | Wheat | nucleus | 85.86 | 84.1 |
| HORVU1Hr1G062330.8 | Barley | nucleus | 86.91 | 73.45 |
| Os03t0395300-01 | Rice | plasma membrane | 60.73 | 59.79 |
| Zm00001d047240_P002 | Maize | nucleus | 58.77 | 57.2 |
| EER92167 | Sorghum | nucleus | 57.85 | 56.38 |
| Zm00001d029420_P002 | Maize | nucleus | 57.72 | 56.25 |
| Bra034308.1-P | Field mustard | nucleus | 40.31 | 47.6 |
| Solyc05g042150.1.1 | Tomato | cytosol | 11.39 | 45.31 |
| TraesCS2B01G192300.1 | Wheat | nucleus | 49.21 | 44.71 |
| Solyc04g078950.1.1 | Tomato | nucleus | 17.67 | 44.26 |
| CDY48180 | Canola | nucleus | 41.75 | 43.22 |
| CDX77048 | Canola | nucleus | 42.02 | 42.4 |
| Solyc07g026880.1.1 | Tomato | cytosol | 8.51 | 42.21 |
| GSMUA_Achr6P10120_001 | Banana | nucleus | 47.12 | 41.05 |
| VIT_18s0001g10560.t01 | Wine grape | nucleus | 44.5 | 40.28 |
| AT2G26570.1 | Thale cress | nucleus | 41.88 | 39.65 |
| Bra041137.1-P | Field mustard | nucleus | 29.06 | 39.57 |
| AT4G33390.1 | Thale cress | nucleus | 40.05 | 39.28 |
| CDX72400 | Canola | nucleus | 34.95 | 39.26 |
| CDY46119 | Canola | nucleus | 34.55 | 38.88 |
| KRH07566 | Soybean | nucleus | 31.15 | 38.7 |
| Solyc07g022910.2.1 | Tomato | plastid | 42.8 | 38.61 |
| CDX68971 | Canola | mitochondrion, nucleus, plastid | 40.71 | 38.59 |
| KRH45361 | Soybean | nucleus | 29.06 | 37.88 |
| GSMUA_Achr5P17590_001 | Banana | nucleus | 40.45 | 37.68 |
| GSMUA_Achr10P... | Banana | cytosol | 40.05 | 37.55 |
| PGSC0003DMT400039921 | Potato | nucleus | 41.75 | 37.27 |
| Solyc12g088830.1.1 | Tomato | nucleus | 41.1 | 37.25 |
| PGSC0003DMT400011385 | Potato | nucleus | 43.46 | 36.77 |
| Bra033647.1-P | Field mustard | nucleus | 34.03 | 36.06 |
| CDY22380 | Canola | nucleus | 33.64 | 35.74 |
| CDX71526 | Canola | nucleus | 33.12 | 34.94 |
| AT5G42880.1 | Thale cress | nucleus | 33.12 | 33.69 |
| Solyc08g015840.1.1 | Tomato | cytosol | 8.64 | 33.67 |
| AT1G45545.2 | Thale cress | nucleus | 33.12 | 33.6 |
| KRH51982 | Soybean | nucleus | 41.62 | 33.37 |
| PGSC0003DMT400020677 | Potato | nucleus | 42.15 | 33.2 |
| CDY17054 | Canola | nucleus | 30.5 | 32.82 |
| CDY43212 | Canola | nucleus | 30.63 | 32.77 |
| Bra014049.1-P | Field mustard | nucleus | 32.07 | 32.49 |
| KRH61284 | Soybean | nucleus | 41.1 | 32.27 |
| CDY17108 | Canola | nucleus | 30.76 | 32.15 |
| Bra040259.1-P | Field mustard | nucleus | 30.63 | 31.97 |
| CDY62582 | Canola | nucleus | 29.97 | 31.28 |
| KRH15355 | Soybean | nucleus | 41.23 | 31.19 |
| TraesCS5B01G237000.1 | Wheat | cytosol | 31.68 | 30.67 |
| TraesCS4B01G300400.1 | Wheat | nucleus | 34.16 | 30.17 |
| TraesCS4B01G386100.1 | Wheat | nucleus | 23.04 | 26.04 |
| TraesCS5B01G103500.1 | Wheat | nucleus | 20.29 | 24.26 |
| TraesCS4B01G127500.1 | Wheat | nucleus | 19.37 | 23.34 |
Protein Annotations
| EnsemblPlants:TraesCS1B01G259500.1 | EnsemblPlantsGene:TraesCS1B01G259500 | InterPro:Web | ncoils:Coil | PANTHER:PTHR32054 | PANTHER:PTHR32054:SF2 |
| PFAM:PF05701 | SEG:seg | MapMan:20.5.8.1 | : | : | : |
Description
No Description!
Coordinates
chr1B:-:456974798..456977186
Molecular Weight (calculated)
84407.9 Da
IEP (calculated)
4.989
GRAVY (calculated)
-0.715
Length
764 amino acids
Sequence
(BLAST)
(BLAST)
001: METIDSTHRR DASMQGAAEP APVLAENLDP SLEIQEKLPH NLTEQQENLN TVVGLEVSNN SLNDKTDDTT STNNTEKVNN ISDSGSGSGS IMVTSARKSN
101: GDNMDHHANI AATPNKRAVT ESRPYKGLVD TAAPFESVKE AVTKFGGIVD WKAYRNHTME RRGAMQLELE KVKQDIPQVK QGSETAEMAR SQVVEELETT
201: KRLVEELKHK LERAQVELEQ SKQDSELAQL RAQEMELGID NGASVVAQTE LAVAKERHQK AIEELKMVKE VLGSTQEQYT TLITERDAAI KRAEEAASSA
301: KETEKRVEEL TLELFASRES LDLAHTAHHD AEEHRLGAAL AKEQDCLAWE RELQQAKEEL RQLDEQILSK TSAQSKLDGN KGILLRLSAD LAAYMANKSS
401: EEDGAVEEHG SEEDREMSRS IQQALASARM ELEDVRGNIA KTNDEANLIR AVAESLSSEL EKEKASLVTL QQRESMASIT VSSLEAELSR TKQEIEMAYT
501: KEAESRAKMA DIPKMLQRAA QEADDAKVAA HSAREELMKS KEEAEQAKAA ATTAEVRLRA ALKEIEASKA SERLALVAAQ ALQESEEATS SEDSPRVTLP
601: VGEYHLLSKR VHEAEELASE RVAASLAQIE LAKESESRSL ERLLEVSGSV DQKKDALKIA AQRAAMAEEG KLGAEAQLRK WRSEHKQLRK AHEAAKHASS
701: PLSTPFAGYK EASYKENKEV LTEAISYMSD NSMGGFVSDK KLRKKKTLFP QMSTLFSRKV QTQT
101: GDNMDHHANI AATPNKRAVT ESRPYKGLVD TAAPFESVKE AVTKFGGIVD WKAYRNHTME RRGAMQLELE KVKQDIPQVK QGSETAEMAR SQVVEELETT
201: KRLVEELKHK LERAQVELEQ SKQDSELAQL RAQEMELGID NGASVVAQTE LAVAKERHQK AIEELKMVKE VLGSTQEQYT TLITERDAAI KRAEEAASSA
301: KETEKRVEEL TLELFASRES LDLAHTAHHD AEEHRLGAAL AKEQDCLAWE RELQQAKEEL RQLDEQILSK TSAQSKLDGN KGILLRLSAD LAAYMANKSS
401: EEDGAVEEHG SEEDREMSRS IQQALASARM ELEDVRGNIA KTNDEANLIR AVAESLSSEL EKEKASLVTL QQRESMASIT VSSLEAELSR TKQEIEMAYT
501: KEAESRAKMA DIPKMLQRAA QEADDAKVAA HSAREELMKS KEEAEQAKAA ATTAEVRLRA ALKEIEASKA SERLALVAAQ ALQESEEATS SEDSPRVTLP
601: VGEYHLLSKR VHEAEELASE RVAASLAQIE LAKESESRSL ERLLEVSGSV DQKKDALKIA AQRAAMAEEG KLGAEAQLRK WRSEHKQLRK AHEAAKHASS
701: PLSTPFAGYK EASYKENKEV LTEAISYMSD NSMGGFVSDK KLRKKKTLFP QMSTLFSRKV QTQT
001: MMDDDHKVSN DISLLPDLNF DSSSPFTSIE FDSSICDLLN LETGGDTPNL IPDHNPFFDS FDGLQEEEED SHFVVEPESP KVYIAPRVMI NHQDSFSLDS
101: RNDEYIEDVK ILPGSPGGIQ DLGLSRLKVP GSPRAFVHPR SSGSPRFVSP TSPVLIDTAA PFESVKEAVS KFGGITDWKA HKIQTIERRK TVDQELEKIQ
201: EDMPDYKKQA VVAEEAKHQV VMELERTRNV VEELKLELEK AEKEEQQAKQ DSDLAKLRVE EMEQGIAGEV SVAAKSQLEV AKARHLSAVS ELGTIREEIE
301: MVSNEYESLL TEKDLAAKKA EDSVLKAKDV EKQMEGLTME VIATKQLLEL AHATHLEAQE KKLDAAMARD QDVYNQEKEL KMVEDEIKRF RQDIDAADDV
401: KTKLKTASAL QQDLRAEIAA YKDSNMGKRN NSDIQAAVDS ARKELEEVIS NIEKANSEVK TLKIIVGSLQ SELAREKHDL SETRQRNRED TREEKCTEIA
501: KKLQEASREA EEAKSLAIAA REELRKAKEE SDEAKTGLSA VERQLMESKK EMEASRASEK LALAAIKALQ ETEYANKIED ISSSPKSIII SVEEYYELSK
601: QAHEVEEAAN RKLAEIVSKI EVAKEEESRI LENLEEVSRE TAIRKVELKE AMTKVEKARD GKVGMDHELR KWRSDNGNRS PEGGNKENLS KSKSALHQPT
701: TFTFGEQASS SNVTPQASSS NVTPETETKK KKKRFSLLPK VFMFLSRKKS SNK
101: RNDEYIEDVK ILPGSPGGIQ DLGLSRLKVP GSPRAFVHPR SSGSPRFVSP TSPVLIDTAA PFESVKEAVS KFGGITDWKA HKIQTIERRK TVDQELEKIQ
201: EDMPDYKKQA VVAEEAKHQV VMELERTRNV VEELKLELEK AEKEEQQAKQ DSDLAKLRVE EMEQGIAGEV SVAAKSQLEV AKARHLSAVS ELGTIREEIE
301: MVSNEYESLL TEKDLAAKKA EDSVLKAKDV EKQMEGLTME VIATKQLLEL AHATHLEAQE KKLDAAMARD QDVYNQEKEL KMVEDEIKRF RQDIDAADDV
401: KTKLKTASAL QQDLRAEIAA YKDSNMGKRN NSDIQAAVDS ARKELEEVIS NIEKANSEVK TLKIIVGSLQ SELAREKHDL SETRQRNRED TREEKCTEIA
501: KKLQEASREA EEAKSLAIAA REELRKAKEE SDEAKTGLSA VERQLMESKK EMEASRASEK LALAAIKALQ ETEYANKIED ISSSPKSIII SVEEYYELSK
601: QAHEVEEAAN RKLAEIVSKI EVAKEEESRI LENLEEVSRE TAIRKVELKE AMTKVEKARD GKVGMDHELR KWRSDNGNRS PEGGNKENLS KSKSALHQPT
701: TFTFGEQASS SNVTPQASSS NVTPETETKK KKKRFSLLPK VFMFLSRKKS SNK
Arabidopsis Description
Plant protein of unknown function (DUF827) [Source:TAIR;Acc:AT1G45545]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.