Factsheet for PGSC0003DMT400039921

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011385
PGSC0003DMT400020677
PGSC0003DMT400039921

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	PGSC0003DMT400011385	AT2G26570.1	20974974
AT2G26570.1	PGSC0003DMT400020677	AT2G26570.1	20974974
AT2G26570.1	PGSC0003DMT400039921	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g042150.1.1	Tomato	cytosol	20.21	90.1
Solyc07g026880.1.1	Tomato	cytosol	14.84	82.47
Solyc12g088830.1.1	Tomato	nucleus	72.9	74.02
Solyc08g015840.1.1	Tomato	cytosol	14.72	64.29
Bra034308.1-P	Field mustard	nucleus	44.98	59.51
CDY48180	Canola	nucleus	46.73	54.2
VIT_18s0001g10560.t01	Wine grape	nucleus	52.57	53.32
PGSC0003DMT400011385	Potato	nucleus	55.84	52.93
AT2G26570.1	Thale cress	nucleus	49.77	52.79
CDX77048	Canola	nucleus	46.61	52.71
Bra041137.1-P	Field mustard	nucleus	32.83	50.09
PGSC0003DMT400020677	Potato	nucleus	56.07	49.48
CDX72400	Canola	nucleus	38.9	48.97
AT4G33390.1	Thale cress	nucleus	43.93	48.27
CDY46119	Canola	nucleus	38.08	48.01
KRH07566	Soybean	nucleus	34.11	47.48
CDX68971	Canola	mitochondrion, nucleus, plastid	44.28	47.02
KRH45361	Soybean	nucleus	31.54	46.08
TraesCS1D01G248300.1	Wheat	nucleus, plastid	38.32	45.75
Os03t0395300-01	Rice	plasma membrane	40.77	44.97
KRH51982	Soybean	nucleus	49.88	44.81
CDY22380	Canola	nucleus	37.62	44.78
HORVU2Hr1G030630.1	Barley	nucleus	41.47	44.77
Bra033647.1-P	Field mustard	nucleus	37.38	44.38
TraesCS2A01G166400.1	Wheat	cytosol	40.77	44.01
CDX71526	Canola	nucleus	36.68	43.37
KRH61284	Soybean	nucleus	48.95	43.06
GSMUA_Achr6P10120_001	Banana	nucleus	43.34	42.3
TraesCS1A01G248800.1	Wheat	nucleus	38.43	42.18
TraesCS2B01G192300.1	Wheat	nucleus	41.24	41.97
Zm00001d029420_P002	Maize	nucleus	38.32	41.84
TraesCS1B01G259500.1	Wheat	nucleus	37.27	41.75
KRH15355	Soybean	nucleus	49.18	41.68
TraesCS2D01G173700.1	Wheat	nucleus	40.89	41.62
CDY17054	Canola	nucleus	34.46	41.55
AT5G42880.1	Thale cress	nucleus	36.45	41.54
Os07t0619100-01	Rice	plasma membrane	39.6	41.49
CDY43212	Canola	nucleus	34.58	41.46
Bra014049.1-P	Field mustard	nucleus	36.45	41.38
Zm00001d022161_P001	Maize	nucleus	38.55	41.25
GSMUA_Achr5P17590_001	Banana	nucleus	39.37	41.1
Bra040259.1-P	Field mustard	nucleus	35.05	40.98
EER92167	Sorghum	nucleus	37.5	40.94
CDY17108	Canola	nucleus	34.93	40.9
AT1G45545.2	Thale cress	nucleus	35.86	40.77
Zm00001d047240_P002	Maize	nucleus	37.27	40.64
GSMUA_Achr9P27100_001	Banana	nucleus	39.02	40.63
KXG36701	Sorghum	nucleus	38.9	40.36
CDY62582	Canola	nucleus	34.46	40.3
GSMUA_Achr10P...	Banana	cytosol	37.85	39.75
GSMUA_Achr5P24580_001	Banana	cytosol	27.57	37.58
HORVU1Hr1G062330.8	Barley	nucleus	39.37	37.28
Os06t0314000-01	Rice	cytosol, nucleus	21.38	36.17
TraesCS4B01G300400.1	Wheat	nucleus	31.54	31.21
PGSC0003DMT400034621	Potato	mitochondrion, plastid	12.85	24.39
PGSC0003DMT400057359	Potato	nucleus	18.93	24.0
PGSC0003DMT400050839	Potato	nucleus	17.06	23.51

Protein Annotations

EnsemblPlants:PGSC0003DMT400039921	EnsemblPlantsGene:PGSC0003DMG400015441	EntrezGene:102605362	InterPro:Web	ncoils:Coil	PANTHER:PTHR32054
PANTHER:PTHR32054:SF2	PFAM:PF05701	PGSC:PGSC0003DMG400015441	RefSeq:XP_006342624.1	SEG:seg	UniParc:UPI0002952B2C
UniProt:M1B8Z1	MapMan:20.5.8.1	:	:	:	:

Description

Paramyosin [Source:PGSC_GENE;Acc:PGSC0003DMG400015441]

Coordinates

chr12:-:56631631..56636338

Molecular Weight (calculated)

94701.3 Da

IEP (calculated)

4.750

GRAVY (calculated)

-0.810

Length

856 amino acids

Sequence
(BLAST)

001: MEDVKDLKQH APESSPTPVV VVSSPDEDQS LSATQTSQNA DEKANLENQQ LNVDASEHVE EATQSLSLEK SETHPTGASS TPMVDQEDSS QSVHSPKPSE
101: PPIDKKSTAL SETSPSSLSN EKPSSSKEEE HIQSNHSGED QASNSSPSST KSADDSCSTS HVQETKPENN SHVESLDNID KAPTLRIKIP GPTAQSKQPE
201: NVDVNRVNID TAAPIQSVKQ AVSKFGGIVD WKAHRQQTVE RRNLIEQELT KVQEEIPLYK KQCQDAEDAK VLVLKELDST KRLIEELKLN LERAQTEEQQ
301: ARQDSELATL RVEEMERGIA DDSSIAAKAQ LEVARARLEA AVSELKSVNS ELDVLRMDYD LLVSEKDVAV EKAEEAVSLS NEVEKTVEDL TIELITSKDA
401: LEAAHAAHLE AEEHRVGAAM AREQDTLNWE NELKQAEEEL ERLNHQILSA KDHKAKLDTA SSLLQDLNTE LAAYMESKLK QEADEEGNMK GEQLETDKRS
501: HHEIQAVVAS AKKELEEVKL NIEKATAEVE CLKVAAVALK AELEKEKSEL ASIQQREGMA AIAITSLEAE LNRTKSEISL LQIKEKEARE KMVELPKQLQ
601: EAAQEADRAK LLAQTVREEL RKAKEEAEQA KAASITVESR LLAVKKEIEA AKASEKLAIA AISALQESES TESTTDETTG VTLSLEEYYE LSKQAHEAEK
701: QANTRVSAAM SQIEVAKESE LSSLNKLEEV NLAMTEKKEA LEIALQKAEK AKEGKLAAEQ ELRKWRAEHE KRRKSGKSVT PVNKTMSSKT SFEEDKESKA
801: SEAAVPHQTL NPKENVQTKS ETDSSQEVKV TKKKKKSFFP RVLMFLGRKK AQAKAR

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.