Factsheet for Zm00001d047240_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d022161_P001
Zm00001d029420_P002
Zm00001d047240_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G26570.1	Zm00001d022161_P001	AT2G26570.1	20974974
AT2G26570.1	Zm00001d029420_P002	AT2G26570.1	20974974
AT2G26570.1	Zm00001d047240_P002	AT2G26570.1	20974974

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029420_P002	Maize	nucleus	77.58	77.68
Os03t0395300-01	Rice	plasma membrane	59.87	60.57
TraesCS1B01G259500.1	Wheat	nucleus	57.2	58.77
TraesCS1D01G248300.1	Wheat	nucleus, plastid	51.85	56.76
TraesCS1A01G248800.1	Wheat	nucleus	56.05	56.41
HORVU1Hr1G062330.8	Barley	nucleus	58.73	51.0
Solyc05g042150.1.1	Tomato	cytosol	11.85	48.44
Zm00001d022161_P001	Maize	nucleus	49.3	48.38
Bra034308.1-P	Field mustard	nucleus	37.71	45.75
Solyc07g026880.1.1	Tomato	cytosol	8.79	44.81
Solyc04g078950.1.1	Tomato	nucleus	16.56	42.62
CDX77048	Canola	nucleus	40.13	41.61
CDY48180	Canola	nucleus	38.85	41.33
GSMUA_Achr6P10120_001	Banana	nucleus	46.11	41.28
VIT_18s0001g10560.t01	Wine grape	nucleus	43.57	40.52
AT2G26570.1	Thale cress	nucleus	40.76	39.65
AT4G33390.1	Thale cress	nucleus	39.24	39.54
Solyc07g022910.2.1	Tomato	plastid	42.42	39.32
KRH07566	Soybean	nucleus	30.7	39.19
Bra041137.1-P	Field mustard	nucleus	27.01	37.79
CDX72400	Canola	nucleus	32.48	37.5
PGSC0003DMT400039921	Potato	nucleus	40.64	37.27
GSMUA_Achr5P17590_001	Banana	nucleus	38.85	37.2
CDY46119	Canola	nucleus	32.1	37.11
KRH45361	Soybean	nucleus	27.64	37.03
GSMUA_Achr10P...	Banana	cytosol	38.22	36.81
PGSC0003DMT400011385	Potato	nucleus	42.29	36.77
Solyc12g088830.1.1	Tomato	nucleus	39.36	36.65
CDX68971	Canola	mitochondrion, nucleus, plastid	37.45	36.48
Solyc08g015840.1.1	Tomato	cytosol	8.92	35.71
CDY22380	Canola	nucleus	32.36	35.33
Bra033647.1-P	Field mustard	nucleus	32.1	34.95
CDX71526	Canola	nucleus	32.1	34.81
CDY43212	Canola	nucleus	30.83	33.89
Bra014049.1-P	Field mustard	nucleus	32.1	33.42
PGSC0003DMT400020677	Potato	nucleus	41.27	33.4
CDY17054	Canola	nucleus	30.19	33.38
KRH51982	Soybean	nucleus	40.38	33.26
CDY62582	Canola	nucleus	30.57	32.79
AT1G45545.2	Thale cress	nucleus	31.34	32.67
KRH61284	Soybean	nucleus	40.25	32.48
AT5G42880.1	Thale cress	nucleus	30.96	32.36
CDY17108	Canola	nucleus	29.81	32.01
Bra040259.1-P	Field mustard	nucleus	29.68	31.83
Zm00001d048523_P001	Maize	nucleus	24.84	31.25
KRH15355	Soybean	nucleus	39.62	30.79
Zm00001d027322_P001	Maize	cytosol	27.26	30.4
Zm00001d005893_P001	Maize	cytosol	28.28	29.21
Zm00001d020719_P002	Maize	nucleus	28.03	27.95
Zm00001d023629_P001	Maize	nucleus	19.24	23.16
Zm00001d041088_P004	Maize	nucleus	18.98	22.96
Zm00001d014236_P001	Maize	nucleus	8.15	12.45

Protein Annotations

EnsemblPlants:Zm00001d047240_P002	EnsemblPlants:Zm00001d047240_T002	EnsemblPlantsGene:Zm00001d047240	EntrezGene:103639026	InterPro:Web	ncoils:Coil
PANTHER:PTHR32054	PANTHER:PTHR32054:SF2	PFAM:PF05701	ProteinID:AQL05954.1	ProteinID:AQL05955.1	ProteinID:AQL05956.1
SEG:seg	UniParc:UPI0004DE8486	UniProt:A0A1D6P801	MapMan:20.5.8.1	:	:

Description

Putative DUF827 domain containing family protein

Coordinates

chr9:-:123671750..123675886

Molecular Weight (calculated)

87288.3 Da

IEP (calculated)

5.165

GRAVY (calculated)

-0.761

Length

785 amino acids

Sequence
(BLAST)

001: MELLDSNGHG ETRAQGAENI APVSANSPDT SSEMQGKLPH SLTEHQEEMG SPAGHAGSLS PKIVSHIEPA RASDDPSKDE GRHAALLTDK SGVEIIYENG
101: FTGASSIIPA AEMKSEEDNM YCRNNVAVTP TKKVESVKGC EGSHTGLVDT SAPFESVKQA VTKFGGIVDW KAYRARSLER RRVMQLELEK VQQEIPQFKE
201: DWETAEVAKA HVIEELERTT RLVDELKHEL ERAQLEVDQA KQDSELALLR AQEMEQGIDD EASVIAQTQL AVAKERHEKA VEELELLKEE LRSTHEQYAV
301: LATERDVAVK RAKEVVRAAK DTEKQVEELT LELIASKESL ESAHASHHEV EEHRLGAALA KEQDFLAWDK ELQEAQEELN QLHEQIASKT NVEAEAVENE
401: RKLLSLKSEL AAYVEDKLNE EAGMLQQQGS DEEKEISRSI KQALASKRKE LAELKGKLEN ARNEANLVRV TAESLSSELD REKASLAALQ QSEGMASITV
501: SSLEAELDRT EQEIEMVHKK EAEAREKMAE LPRMLQRAAQ EAEDAKMAAH SAQEELRKAK EEVERAKASA TTAGTRLRAV SKEIEASKAS ERLAIAAAQA
601: MQESEDTGST GASPRVVTLP VSEYHALSEK VHEAEELANE RVAVALAQVE LAKVSESRSL ERLQEASKET EKKKSDLRIA LERAERANEG KLGAERELRR
701: WRAEHVQRRK AHEAAQHAVS PVRTPPRMFV QQKGSYLEGN ELRDPKVHKS TGSMDQFVSD KKSRKKKSFL TQLSTLLSRK THAQT

Best Arabidopsis Sequence Match ( AT2G26570.1 )
(BLAST)

001: MEDLKTVEAS DNVVSDNVEK VNPELIDSTI RESNIQSATK VDNIPQSQTD TEETQQSQTD TEETQQSQTD DTTGNAKIYV DDTFSPSDAA TAAVLTGKDS
101: TSTTIVEEVM EPDEIGLPSV KITEAATGTA RNGGGSPRTV SSPRFSGSPV STGTPKNVDS HRGLIDTAAP FESVKEAVSK FGGITDWKSH RMQAVERRKL
201: IEEELKKIHE EIPEYKTHSE TAEAAKLQVL KELESTKRLI EQLKLNLDKA QTEEQQAKQD SELAKLRVEE MEQGIAEDVS VAAKAQLEVA KARHTTAITE
301: LSSVKEELET LHKEYDALVQ DKDVAVKKVE EAMLASKEVE KTVEELTIEL IATKESLESA HASHLEAEEQ RIGAAMARDQ DTHRWEKELK QAEEELQRLN
401: QQIHSSKDLK SKLDTASALL LDLKAELVAY MESKLKQEAC DSTTNTDPST ENMSHPDLHA AVASAKKELE EVNVNIEKAA AEVSCLKLAS SSLQLELEKE
501: KSTLASIKQR EGMASIAVAS IEAEIDRTRS EIASVQSKEK DAREKMVELP KQLQQAAEEA DEAKSLAEVA REELRKAKEE AEQAKAGAST MESRLFAAQK
601: EIEAAKASER LALAAIKALE ESESTLKAND TDSPRSVTLS LEEYYELSKR AHEAEELANA RVAAAVSRIE EAKETEMRSL EKLEEVNRDM DARKKALKEA
701: TEKAEKAKEG KLGVEQELRK WRAEHEQKRK AGDGVNTEKN LKESFEGGKM EQSPEAVVYA SSPSESYGTE ENSETNLSPQ TKSRKKKKKL SFPRFFMFLS
801: KKKSHNN

Arabidopsis Description

WEB1WEB1 [Source:UniProtKB/TrEMBL;Acc:A0A178VMR8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.